hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-10173598/chunk_1/iprscan-20080811-10173598.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11093 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 416.2 4.3e-122 1 PF07714.7.fs Protein tyrosine kinase 414.3 1.6e-121 1 PF00069.15.fs Protein kinase domain 127.3 4.7e-36 1 PF00069.15.ls Protein kinase domain 129.2 1e-35 1 PF00754.15.fs F5/8 type C domain 116.3 1.6e-32 1 PF00754.15.ls F5/8 type C domain 118.1 2.3e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00754.15.fs 1/1 64 200 .. 1 163 [] 116.3 1.6e-32 PF00754.15.ls 1/1 64 200 .. 1 163 [] 118.1 2.3e-32 PF07714.7.fs 1/1 591 886 .. 1 272 [] 414.3 1.6e-121 PF00069.15.fs 1/1 591 894 .] 1 287 [] 127.3 4.7e-36 PF00069.15.ls 1/1 591 894 .] 1 287 [] 129.2 1e-35 PF07714.7.ls 1/1 591 886 .. 1 272 [] 416.2 4.3e-122 Alignments of top-scoring domains: PF00754.15.fs: domain 1 of 1, from 64 to 200: score 116.3, E = 1.6e-32 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse i+aSs++s+s++a ++rL s+ DG+ +aW++ fk11093 64 DISASSSWSDSTAARHSRLESS-----DGD-----------GAWCP- 93 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn..gyvksYkiqy + s+ ++ ++lqvDL++ + + v tqgr +gg ++++ +sY++ y fk11093 94 AGSVF---PKEEEYLQVDLQRLHLVALVGTQGRHAGGLgkEFSRSYRLRY 140 SdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikA S DG + W +kd ++++++ +gn+d ++v ++ pp++A fk11093 141 SRDG-R--RWMGWKD--------RWgQEVIsGNeDPEgVVLKDLGPPMVA 179 RYvRivptswnggggiasraEl<-* R vR++p + + ++r+El fk11093 180 RLVRFYPR-ADRVMSVCLRVEL 200 PF00754.15.ls: domain 1 of 1, from 64 to 200: score 118.1, E = 2.3e-32 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse i+aSs++s+s++a ++rL s+ DG+ +aW++ fk11093 64 DISASSSWSDSTAARHSRLESS-----DGD-----------GAWCP- 93 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn..gyvksYkiqy + s+ ++ ++lqvDL++ + + v tqgr +gg ++++ +sY++ y fk11093 94 AGSVF---PKEEEYLQVDLQRLHLVALVGTQGRHAGGLgkEFSRSYRLRY 140 SdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikA S DG + W +kd ++++++ +gn+d ++v ++ pp++A fk11093 141 SRDG-R--RWMGWKD--------RWgQEVIsGNeDPEgVVLKDLGPPMVA 179 RYvRivptswnggggiasraEl<-* R vR++p + + ++r+El fk11093 180 RLVRFYPR-ADRVMSVCLRVEL 200 PF07714.7.fs: domain 1 of 1, from 591 to 886: score 414.3, E = 1.6e-121 *->lklgkkLGeGaFGeVykGtlkg............sgdgteikVAVKt l++ +kLGeG+FGeV++++ + +++ + + + + +g+ + VAVK+ fk11093 591 LRFKEKLGEGQFGEVHLCEVDSpqdlvsldfplnVRKGHPLLVAVKI 637 LkeigaseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpgl L++ +a+ + r dFl+E++iM++l + pNi+rLlGvc++ ++P l fk11093 638 LRP-DATKNA--RNDFLKEVKIMSRL-KDPNIIRLLGVCVQ-DDP----L 678 yiVtEymegGdLldfLrkhr................egrpLtlkdLlsfa +++t yme+GdL fL +h +++ ++ +++++ +g+ ++ ++Ll+ a fk11093 679 CMITDYMENGDLNQFLSAHQledkaaegapgdgqaaQGPTISYPMLLHVA 728 lQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyY +QiA+GM YL+ nfvHRDLA+RNcLV+en+++KI+DFG++R +y dyY fk11093 729 AQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYY 778 vrkkgggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGe.qPFY r++g + lP++WmA E++ gkFt++SDVW+FGV+LWE++ l++ qP + fk11093 779 -RVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRaQP-F 826 pgmsneevlellyedGyR.......LprPenCPdelYdlMlqCWaedPed +++e+v+e + R+++++ L rP+ CP+ lY+lMl+CW ++ e+ fk11093 827 GQLTDEQVIENA-GEFFRdqgrqvyLSRPPACPQGLYELMLRCWSRESEQ 875 RPtFselveeL<-* RP Fs+l+++L fk11093 876 RPPFSQLHRFL 886 PF00069.15.fs: domain 1 of 1, from 591 to 894: score 127.3, E = 4.7e-36 *->yelleklGsGsfGtVykakhkgtgk................iVAvKi ++++eklG+G fG+V ++ + ++ + + + + +++++ +VAvKi fk11093 591 LRFKEKLGEGQFGEVHLCEVDSPQDlvsldfplnvrkghplLVAVKI 637 ikkrkekskkdktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEy ++ + +k +++++ E++i+ rL+ pNI+rl++v+ +d l+++++y fk11093 638 LRPDATKN--ARNDFLK-EVKIMSRLKDPNIIRLLGVCVQDDPLCMITDY 684 cegGLrvldLfdyls..............e..trrkgpllfsedeakkia +e+G dL +ls ++ +++ ++ ++++++ ++ ++ s+ + ++a fk11093 685 MENG----DLNQFLSahqledkaaegapgDgqAAQGPTI--SYPMLLHVA 728 lQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls. Qi++g+ YL +++HRDL N+L+ +n ++ KiaDFG ++ l+ fk11093 729 AQIASGMRYLATLNFVHRDLATRNCLVGENFTI----KIADFGMSRNLYa 774 t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilye..lltGk + ++ v +++mA E +l + +t++DvW++Gv+l+e +l++ fk11093 775 GdYYRvQGRAVLPIRWMAWECIL-MGKFTTASDVWAFGVTLWEvlMLCRA 823 pPFsgevq.ds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlse PF + +++ + ++++ g+++ ++p ++ + fk11093 824 QPFGQL-TdEQvIENAGEFFRDQGRQVYLSRPPACP-------------Q 859 eakdLikkcLnkDPskRlt........aeeilqHPwf<-* + +L+ +c+ + ++R+ ++ ++ ae++l+ + fk11093 860 GLYELMLRCWSRESEQRPPfsqlhrflAEDALNT--V 894 PF00069.15.ls: domain 1 of 1, from 591 to 894: score 129.2, E = 1e-35 *->yelleklGsGsfGtVykakhkgtgk................iVAvKi ++++eklG+G fG+V ++ + ++ + + + + +++++ +VAvKi fk11093 591 LRFKEKLGEGQFGEVHLCEVDSPQDlvsldfplnvrkghplLVAVKI 637 ikkrkekskkdktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEy ++ + +k +++++ E++i+ rL+ pNI+rl++v+ +d l+++++y fk11093 638 LRPDATKN--ARNDFLK-EVKIMSRLKDPNIIRLLGVCVQDDPLCMITDY 684 cegGLrvldLfdyls..............e..trrkgpllfsedeakkia +e+G dL +ls ++ +++ ++ ++++++ ++ ++ s+ + ++a fk11093 685 MENG----DLNQFLSahqledkaaegapgDgqAAQGPTI--SYPMLLHVA 728 lQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls. Qi++g+ YL +++HRDL N+L+ +n ++ KiaDFG ++ l+ fk11093 729 AQIASGMRYLATLNFVHRDLATRNCLVGENFTI----KIADFGMSRNLYa 774 t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilye..lltGk + ++ v +++mA E +l + +t++DvW++Gv+l+e +l++ fk11093 775 GdYYRvQGRAVLPIRWMAWECIL-MGKFTTASDVWAFGVTLWEvlMLCRA 823 pPFsgevq.ds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlse PF + +++ + ++++ g+++ ++p ++ + fk11093 824 QPFGQL-TdEQvIENAGEFFRDQGRQVYLSRPPACP-------------Q 859 eakdLikkcLnkDPskRlt........aeeilqHPwf<-* + +L+ +c+ + ++R+ ++ ++ ae++l+ + fk11093 860 GLYELMLRCWSRESEQRPPfsqlhrflAEDALNT--V 894 PF07714.7.ls: domain 1 of 1, from 591 to 886: score 416.2, E = 4.3e-122 *->lklgkkLGeGaFGeVykGtlkg............sgdgteikVAVKt l++ +kLGeG+FGeV++++ + +++ + + + + +g+ + VAVK+ fk11093 591 LRFKEKLGEGQFGEVHLCEVDSpqdlvsldfplnVRKGHPLLVAVKI 637 LkeigaseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpgl L++ +a+ + r dFl+E++iM++l + pNi+rLlGvc++ ++P l fk11093 638 LRP-DATKNA--RNDFLKEVKIMSRL-KDPNIIRLLGVCVQ-DDP----L 678 yiVtEymegGdLldfLrkhr................egrpLtlkdLlsfa +++t yme+GdL fL +h +++ ++ +++++ +g+ ++ ++Ll+ a fk11093 679 CMITDYMENGDLNQFLSAHQledkaaegapgdgqaaQGPTISYPMLLHVA 728 lQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyY +QiA+GM YL+ nfvHRDLA+RNcLV+en+++KI+DFG++R +y dyY fk11093 729 AQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYY 778 vrkkgggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGe.qPFY r++g + lP++WmA E++ gkFt++SDVW+FGV+LWE++ l++ qP + fk11093 779 -RVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRaQP-F 826 pgmsneevlellyedGyR.......LprPenCPdelYdlMlqCWaedPed +++e+v+e + R+++++ L rP+ CP+ lY+lMl+CW ++ e+ fk11093 827 GQLTDEQVIENA-GEFFRdqgrqvyLSRPPACPQGLYELMLRCWSRESEQ 875 RPtFselveeL<-* RP Fs+l+++L fk11093 876 RPPFSQLHRFL 886 //