hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20100628/iprscan-20100628-14192732/chunk_1/iprscan-20100628-14192732.nocrc
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Query sequence: fk11141
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01412.9.fs Putative GTPase activating protein for Arf     159.1    1.8e-45   1
PF01412.9.ls Putative GTPase activating protein for Arf     158.8    1.3e-44   1
PF08518.2.ls Spa2 homology domain (SHD) of GIT              137.6    3.2e-38   2
PF08518.2.fs Spa2 homology domain (SHD) of GIT              133.6    5.1e-37   2
PF00023.20.fs Ankyrin repeat                                  39.8      4e-10   3
PF00023.20.ls Ankyrin repeat                                  40.8    4.2e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01412.9.ls   1/1       3   128 ..     1   137 []   158.8  1.3e-44
PF01412.9.fs   1/1       7   128 ..     8   137 .]   159.1  1.8e-45
PF00023.20.fs   1/3     141   164 ..     6    29 ..     3.0      7.6
PF00023.20.fs   2/3     170   202 ..     1    33 []    26.0  2.8e-06
PF00023.20.ls   1/2     170   202 ..     1    33 []    28.0    3e-05
PF00023.20.fs   3/3     203   235 ..     1    33 []    10.8    0.049
PF00023.20.ls   2/2     203   235 ..     1    33 []    12.8     0.41
PF08518.2.ls   1/2     277   307 ..     1    31 []    68.5    2e-17
PF08518.2.fs   1/2     277   307 ..     1    31 []    66.5  7.9e-17
PF08518.2.ls   2/2     341   371 ..     1    31 []    69.1  1.3e-17
PF08518.2.fs   2/2     341   371 ..     1    31 []    67.1  5.4e-17

Alignments of top-scoring domains:
PF01412.9.ls: domain 1 of 1, from 3 to 128: score 158.8, E = 1.3e-44
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                         l++ r+ +   ++C+DC a p+P WaS++ Gv++C eC+++HR+
     fk11141     3    ---LRMSRKGP-RAEVCADCSA-PDPGWASISRGVLVCDECCSVHRS 44   

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L G+HiS V  ++l++ +W+p+ l++++   +  ++ans+wE+ l d++ 
     fk11141    45 L-GRHISIV--KHLRHSAWPPTLLQMVH--TLASNGANSIWEHSLLDPAQ 89   

                   kpkdsdaaa.v.KCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                     ++++ a++++K    + ++++fi+aKY++++fv+k+++++   
     fk11141    90 VQSGRRKANpQdK---VHPIKSEFIRAKYQMLAFVHKLPCRD    128  

PF01412.9.fs: domain 1 of 1, from 7 to 128: score 159.1, E = 1.8e-45
                   *->rsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRnLfGvHiS
                      r+ +   ++C+DC a p+P WaS++ Gv++C eC+++HR+L G+HiS
     fk11141     7    RKGP-RAEVCADCSA-PDPGWASISRGVLVCDECCSVHRSL-GRHIS 50   

                   kVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfslkpkdsda
                    V  ++l++ +W+p+ l++++   +  ++ans+wE+ l d++   ++++ 
     fk11141    51 IV--KHLRHSAWPPTLLQMVH--TLASNGANSIWEHSLLDPAQVQSGRRK 96   

                   aa.v.KCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   a++++K    + ++++fi+aKY++++fv+k+++++   
     fk11141    97 ANpQdK---VHPIKSEFIRAKYQMLAFVHKLPCRD    128  

PF00023.20.fs: domain 1 of 3, from 141 to 164: score 3.0, E = 7.6
                   *->LHlAalrgnlevvklLlsqGAdln<-*
                      LH  ++ gnle +  Lls GA  n   
     fk11141   141    LHSSVRTGNLETCLRLLSLGAQAN    164  

PF00023.20.fs: domain 2 of 3, from 170 to 202: score 26.0, E = 2.8e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPLH+Aa+ g++  ++lL+ +GAd+   d    
     fk11141   170    KGTTPLHVAAKAGQTLQAELLVVYGADPGSPDV    202  

PF00023.20.ls: domain 1 of 2, from 170 to 202: score 28.0, E = 3e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPLH+Aa+ g++  ++lL+ +GAd+   d    
     fk11141   170    KGTTPLHVAAKAGQTLQAELLVVYGADPGSPDV    202  

PF00023.20.fs: domain 3 of 3, from 203 to 235: score 10.8, E = 0.049
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TP+ +A + g++e+++ L+++  +l  +     
     fk11141   203    NGRTPIDYARQAGHHELAERLVECQYELTDRLA    235  

PF00023.20.ls: domain 2 of 2, from 203 to 235: score 12.8, E = 0.41
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TP+ +A + g++e+++ L+++  +l  +     
     fk11141   203    NGRTPIDYARQAGHHELAERLVECQYELTDRLA    235  

PF08518.2.ls: domain 1 of 2, from 277 to 307: score 68.5, E = 2e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      akkKL++ls+r+FeeL++Dv+devdRRe+da   
     fk11141   277    AKKKLQALSNRLFEELAMDVYDEVDRRENDA    307  

PF08518.2.fs: domain 1 of 2, from 277 to 307: score 66.5, E = 7.9e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      akkKL++ls+r+FeeL++Dv+devdRRe+da   
     fk11141   277    AKKKLQALSNRLFEELAMDVYDEVDRRENDA    307  

PF08518.2.ls: domain 2 of 2, from 341 to 371: score 69.1, E = 1.3e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      +++KLar++areF++L+iD+l+e++RR+q++   
     fk11141   341    GRQKLARFNAREFATLIIDILSEAKRRQQGK    371  

PF08518.2.fs: domain 2 of 2, from 341 to 371: score 67.1, E = 5.4e-17
                   *->akkKLarlsareFeeLviDvldevdRReqda<-*
                      +++KLar++areF++L+iD+l+e++RR+q++   
     fk11141   341    GRQKLARFNAREFATLIIDILSEAKRRQQGK    371  

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