hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20100628/iprscan-20100628-14192732/chunk_1/iprscan-20100628-14192732.nocrc
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Query sequence: fk11141
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 170.4    1.8e-46   1
SM00555                                                  98.7    6.8e-25   2
SM00248                                                  39.3    5.2e-07   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00105     1/1       3   128 ..     1   139 []   170.4  1.8e-46
SM00248     1/3     136   165 ..     1    30 []     7.6  4.5e+02
SM00248     2/3     170   199 ..     1    30 []    16.3      4.2
SM00248     3/3     203   232 ..     1    30 []    15.4      8.3
SM00555     1/2     277   307 ..     1    31 []    51.5  1.1e-10
SM00555     2/2     341   371 ..     1    31 []    47.2  2.2e-09

Alignments of top-scoring domains:
SM00105: domain 1 of 1, from 3 to 128: score 170.4, E = 1.8e-46
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                         l++ R+ + + ++C+DC a p+P WaS+++Gv++C eC+++HRs
     fk11141     3    ---LRMSRKGP-RAEVCADCSA-PDPGWASISRGVLVCDECCSVHRS 44   

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L G+HiS V  ++l++ +W+++ L++++  ++  ++ans+we+ l d++ 
     fk11141    45 L-GRHISIV--KHLRHSAWPPTLLQMVH--TLASNGANSIWEHSLLDPAQ 89   

                   kpkdsda.aasv.KCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                     +++ ++a++++K   +++++++fi+aKY++++f v+k+++++   
     fk11141    90 VQSGR-RkANPQdK---VHPIKSEFIRAKYQMLAF-VHKLPCRD    128  

SM00248: domain 1 of 3, from 136 to 165: score 7.6, E = 4.5e+02
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d    LH  +++gnle++  Ll+ ga  n    
     fk11141   136    DLSKQLHSSVRTGNLETCLRLLSLGAQANF    165  

SM00248: domain 2 of 3, from 170 to 199: score 16.3, E = 4.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G TpLH+Aa+ g+   ++lL+ +gad+     
     fk11141   170    KGTTPLHVAAKAGQTLQAELLVVYGADPGS    199  

SM00248: domain 3 of 3, from 203 to 232: score 15.4, E = 8.3
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrTp+ +A + g++e+++ L++   ++++   
     fk11141   203    NGRTPIDYARQAGHHELAERLVECQYELTD    232  

SM00555: domain 1 of 2, from 277 to 307: score 51.5, E = 1.1e-10
                   *->aRqKLarLsnaqFeeLltDvndElkRRenea<-*
                      a++KL+ Lsn++FeeL +Dv+dE++RRen+a   
     fk11141   277    AKKKLQALSNRLFEELAMDVYDEVDRRENDA    307  

SM00555: domain 2 of 2, from 341 to 371: score 47.2, E = 2.2e-09
                   *->aRqKLarLsnaqFeeLltDvndElkRRenea<-*
                      +RqKLar++ ++F +L++D+++E+kRR++++   
     fk11141   341    GRQKLARFNAREFATLIIDILSEAKRRQQGK    371  

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