hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12555512/chunk_1/iprscan-20090618-12555512.nocrc
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Query sequence: fk11143
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                 12.2    0.00024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/1     292   351 ..     1    57 []    12.2  0.00024

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 1, from 292 to 351: score 12.2, E = 0.00024
                   *->rrkRTtftpeQleeLEk.eFq..knrYPsreeReeLAkkLgLterqV
                      + kR +  ++ ++++   +Fq+ +++YP+ +e +++A++++Lt  qV
     fk11143   292    KNKRGVLPKHATNIMRSwLFQhlMHPYPTEDEKRQIAAQTNLTLLQV 338  

                   kvWFQNRRaKwKk<-*
                    +WF N R +  +   
     fk11143   339 NNWFINARRRILQ    351  

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