hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12555512/chunk_1/iprscan-20090618-12555512.nocrc
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Query sequence: fk11143
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00389                                                  54.7    1.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00389    1/1     291   356 ..     1    63 []    54.7  1.2e-11

Alignments of top-scoring domains:
SM00389: domain 1 of 1, from 291 to 356: score 54.7, E = 1.2e-11
                   *->krrkRtsftpeQleeLEkeFeknp...YPsreereeLAkeLgLterq
                      ++ kR ++ ++++ +++ +  ++  ++YP+++e++++A++++Lt  q
     fk11143   291    SKNKRGVLPKHATNIMRSWLFQHLmhpYPTEDEKRQIAAQTNLTLLQ 337  

                   VkvWFQNRRakwkrqekkk<-*
                   V++WF N+R++    + +    
     fk11143   338 VNNWFINARRRILQPMLDA    356  

//