hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-10360582/chunk_1/iprscan-20080811-10360582.nocrc
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Query sequence: fk11295
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF02770.9.fs  Acyl-CoA dehydrogenase, middle domain      98.1    2.7e-27   1
PF02770.9.ls  Acyl-CoA dehydrogenase, middle domain      99.9    6.9e-27   1
PF02771.7.fs  Acyl-CoA dehydrogenase, N-terminal doma    68.8    1.7e-18   1
PF02771.7.ls  Acyl-CoA dehydrogenase, N-terminal doma    63.2    7.7e-16   1
PF00441.14.fs Acyl-CoA dehydrogenase, C-terminal doma    16.9    0.00025   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02771.7.ls    1/1       1   105 [.     1   128 []    63.2  7.7e-16
PF02771.7.fs    1/1       6   105 ..    14   128 .]    68.8  1.7e-18
PF02770.9.fs    1/1     109   160 ..     1    60 []    98.1  2.7e-27
PF02770.9.ls    1/1     109   160 ..     1    60 []    99.9  6.9e-27
PF00441.14.fs   1/1     215   240 ..     1    27 [.    16.9  0.00025

Alignments of top-scoring domains:
PF02771.7.ls: domain 1 of 1, from 1 to 105: score 63.2, E = 7.7e-16
                   *->seEqemlratvREkFAqeEiaPyaaeGRRvDktsefpalrelikaLg
                              + v+ +FA  E aP  ae   +D+ + fp  + ++++++
     fk11295     1    --------QKVAFDFAAREMAPNMAE---WDQKELFP--VDVMRKAA 34   

                   klGLlgihvPEeyRGGaGadylaRFmLHAQVaalviEElarvcAstgvil
                   +lG+ g+ +  +  GG+G+++l+        +  + E la +c+st   +
     fk11295    35 QLGFGGVYIQTDV-GGSGLSRLD--------TSVIFEALATGCTSTTAYI 75   

                   svhssLgqnpilkfGseEQKkkyLPqltsGe<-*
                   s+h + + + i  fG+eEQ  k+ P+l + e   
     fk11295    76 SIH-NMCAWMIDSFGNEEQRHKFCPPLCTME    105  

PF02771.7.fs: domain 1 of 1, from 6 to 105: score 68.8, E = 1.7e-18
                   *->kFAqeEiaPyaaeGRRvDktsefpalrelikaLgklGLlgihvPEey
                      +FA  E aP  ae   +D+ + fp  + +++++++lG+ g+ +  + 
     fk11295     6    DFAAREMAPNMAE---WDQKELFP--VDVMRKAAQLGFGGVYIQTDV 47   

                   RGGaGadylaRFmLHAQVaalviEElarvcAstgvilsvhssLgqnpilk
                    GG+G+++l+        +  + E la +c+st   +s+h + + + i  
     fk11295    48 -GGSGLSRLD--------TSVIFEALATGCTSTTAYISIH-NMCAWMIDS 87   

                   fGseEQKkkyLPqltsGe<-*
                   fG+eEQ  k+ P+l + e   
     fk11295    88 FGNEEQRHKFCPPLCTME    105  

PF02770.9.fs: domain 1 of 1, from 109 to 160: score 98.1, E = 2.7e-27
                   *->afalTEPgaGSDaaalrTtiAvrddGdddhyvlNTPGsKiwItnagp
                      +++lTEPg+GSDaa+l T  A++ +G  dhy+lN  GsK +I++ag 
     fk11295   109    SYCLTEPGSGSDAASLLTS-AKK-QG--DHYILN--GSKAFISGAG- 148  

                   vADvfiVlArlTd<-*
                    +D+++V++r T+   
     fk11295   149 ESDIYVVMCR-TG    160  

PF02770.9.ls: domain 1 of 1, from 109 to 160: score 99.9, E = 6.9e-27
                   *->afalTEPgaGSDaaalrTtiAvrddGdddhyvlNTPGsKiwItnagp
                      +++lTEPg+GSDaa+l T  A++ +G  dhy+lN  GsK +I++ag 
     fk11295   109    SYCLTEPGSGSDAASLLTS-AKK-QG--DHYILN--GSKAFISGAG- 148  

                   vADvfiVlArlTd<-*
                    +D+++V++r T+   
     fk11295   149 ESDIYVVMCR-TG    160  

PF00441.14.fs: domain 1 of 1, from 215 to 240: score 16.9, E = 0.00025
                   *->grGfrvametvlnheRlaiaagalGla<-*
                      g+Gf +a+++ ln +R++ia+ +lG +   
     fk11295   215    GQGFLIAVRG-LNGGRINIASCSLGCC    240  

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