# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk11443.fasta.nr -Q fk11443.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk11443, 125 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842642 sequences Expectation_n fit: rho(ln(x))= 4.1866+/-0.000177; mu= 8.6376+/- 0.010 mean_var=60.7401+/-12.042, 0's: 54 Z-trim: 58 B-trim: 0 in 0/65 Lambda= 0.164565 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088660|dbj|BAD92777.1| solute carrier family ( 125) 764 189.3 1.1e-46 gi|17391215|gb|AAH18514.1| SLC19A2 protein [Homo s ( 296) 547 138.2 6.5e-31 gi|194384326|dbj|BAG64936.1| unnamed protein produ ( 384) 547 138.3 7.7e-31 gi|56417731|emb|CAI19781.1| solute carrier family ( 459) 547 138.4 8.7e-31 gi|119611250|gb|EAW90844.1| solute carrier family ( 464) 547 138.4 8.8e-31 gi|12643426|sp|O60779|S19A2_HUMAN Thiamine transpo ( 497) 547 138.4 9.2e-31 gi|109019417|ref|XP_001093667.1| PREDICTED: solute ( 495) 536 135.8 5.6e-30 gi|194210277|ref|XP_001491467.2| PREDICTED: simila ( 498) 501 127.5 1.8e-27 gi|89112748|gb|ABD61002.1| high affinity thiamine ( 490) 498 126.8 2.9e-27 gi|73960670|ref|XP_547474.2| PREDICTED: similar to ( 296) 487 123.9 1.3e-26 gi|194036780|ref|XP_001928304.1| PREDICTED: simila ( 496) 489 124.6 1.3e-26 gi|73960672|ref|XP_850843.1| PREDICTED: similar to ( 459) 487 124.1 1.7e-26 gi|61859674|ref|XP_612064.1| PREDICTED: similar to ( 496) 486 123.9 2.1e-26 gi|19171656|gb|AAL85635.1|AF326916_1 high-affinity ( 460) 473 120.8 1.7e-25 gi|148707313|gb|EDL39260.1| solute carrier family ( 468) 473 120.8 1.7e-25 gi|26336849|dbj|BAC32108.1| unnamed protein produc ( 498) 473 120.8 1.8e-25 gi|12002904|gb|AAG43424.1|AF179403_1 thiamine tran ( 498) 473 120.8 1.8e-25 gi|71122485|gb|AAH99811.1| Solute carrier family 1 ( 498) 469 119.9 3.5e-25 gi|126306212|ref|XP_001364625.1| PREDICTED: simila ( 501) 447 114.7 1.3e-23 gi|13278426|gb|AAH04021.1| Slc19a2 protein [Mus mu ( 85) 436 111.3 2.3e-23 gi|118083551|ref|XP_425529.2| PREDICTED: similar t ( 483) 382 99.2 5.6e-19 gi|118095021|ref|XP_422610.2| PREDICTED: hypotheti ( 474) 323 85.2 9.1e-15 gi|149601220|ref|XP_001508774.1| PREDICTED: hypoth ( 167) 313 82.4 2.3e-14 gi|154757673|gb|AAI51721.1| SLC19A3 protein [Bos t ( 485) 316 83.5 2.9e-14 gi|148670204|gb|EDL02151.1| solute carrier family ( 487) 316 83.5 2.9e-14 gi|93140692|sp|Q99PL8|S19A3_MOUSE Thiamine transpo ( 488) 316 83.5 2.9e-14 gi|12483890|gb|AAG53880.1|AF271634_1 solute carrie ( 488) 316 83.5 2.9e-14 gi|149016277|gb|EDL75523.1| solute carrier family ( 481) 315 83.3 3.4e-14 gi|126338296|ref|XP_001373465.1| PREDICTED: hypoth ( 490) 313 82.8 4.8e-14 gi|149711558|ref|XP_001494201.1| PREDICTED: simila ( 522) 311 82.4 7e-14 gi|189529033|ref|XP_686091.3| PREDICTED: similar t ( 501) 309 81.9 9.5e-14 gi|126338284|ref|XP_001373356.1| PREDICTED: hypoth ( 489) 306 81.2 1.5e-13 gi|47123952|gb|AAH70848.1| MGC84586 protein [Xenop ( 491) 306 81.2 1.5e-13 gi|189520214|ref|XP_697541.3| PREDICTED: similar t ( 465) 305 80.9 1.7e-13 gi|109101329|ref|XP_001111429.1| PREDICTED: simila ( 496) 301 80.0 3.5e-13 gi|75076960|sp|Q4R877|S19A3_MACFA Thiamine transpo ( 496) 301 80.0 3.5e-13 gi|73994104|ref|XP_543276.2| PREDICTED: similar to ( 491) 299 79.5 4.9e-13 gi|114583731|ref|XP_526049.2| PREDICTED: solute ca ( 496) 297 79.0 6.8e-13 gi|73994106|ref|XP_543277.2| PREDICTED: similar to ( 608) 297 79.1 7.8e-13 gi|74733486|sp|Q9BZV2|S19A3_HUMAN Thiamine transpo ( 496) 294 78.3 1.1e-12 gi|189065532|dbj|BAG35371.1| unnamed protein produ ( 496) 294 78.3 1.1e-12 gi|27694616|gb|AAH43746.1| MGC52872 protein [Xenop ( 208) 288 76.5 1.6e-12 gi|156213850|gb|EDO34856.1| predicted protein [Nem ( 446) 285 76.1 4.6e-12 gi|49522630|gb|AAH75531.1| Solute carrier family 1 ( 470) 277 74.3 1.8e-11 gi|47205243|emb|CAF91078.1| unnamed protein produc ( 461) 274 73.6 2.8e-11 gi|89268961|emb|CAJ82499.1| Novel solute carrier f ( 488) 262 70.7 2.1e-10 gi|156541678|ref|XP_001602920.1| PREDICTED: simila ( 474) 256 69.3 5.6e-10 gi|126350461|ref|XP_001381072.1| PREDICTED: hypoth ( 581) 256 69.4 6.5e-10 gi|115655535|ref|XP_791719.2| PREDICTED: similar t ( 533) 255 69.1 7.2e-10 gi|53126560|emb|CAG30966.1| hypothetical protein [ ( 496) 254 68.8 8e-10 >>gi|62088660|dbj|BAD92777.1| solute carrier family 19, (125 aa) initn: 764 init1: 764 opt: 764 Z-score: 993.3 bits: 189.3 E(): 1.1e-46 Smith-Waterman score: 764; 100.000% identity (100.000% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVNTFIAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVNTFIAL 10 20 30 40 50 60 70 80 90 100 110 120 fk1144 ALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQSSS 70 80 90 100 110 120 fk1144 QVTTS ::::: gi|620 QVTTS >>gi|17391215|gb|AAH18514.1| SLC19A2 protein [Homo sapie (296 aa) initn: 547 init1: 547 opt: 547 Z-score: 710.2 bits: 138.2 E(): 6.5e-31 Smith-Waterman score: 547; 92.000% identity (96.000% similar) in 100 aa overlap (26-125:197-296) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|173 LFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 170 180 190 200 210 220 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED 230 240 250 260 270 280 120 fk1144 PQSSSQVTTS :::::::::: gi|173 PQSSSQVTTS 290 >>gi|194384326|dbj|BAG64936.1| unnamed protein product [ (384 aa) initn: 547 init1: 547 opt: 547 Z-score: 708.8 bits: 138.3 E(): 7.7e-31 Smith-Waterman score: 547; 92.000% identity (96.000% similar) in 100 aa overlap (26-125:285-384) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|194 LFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 260 270 280 290 300 310 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED 320 330 340 350 360 370 120 fk1144 PQSSSQVTTS :::::::::: gi|194 PQSSSQVTTS 380 >>gi|56417731|emb|CAI19781.1| solute carrier family 19 ( (459 aa) initn: 547 init1: 547 opt: 547 Z-score: 707.9 bits: 138.4 E(): 8.7e-31 Smith-Waterman score: 547; 92.000% identity (96.000% similar) in 100 aa overlap (26-125:360-459) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|564 LFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 330 340 350 360 370 380 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|564 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED 390 400 410 420 430 440 120 fk1144 PQSSSQVTTS :::::::::: gi|564 PQSSSQVTTS 450 >>gi|119611250|gb|EAW90844.1| solute carrier family 19 ( (464 aa) initn: 547 init1: 547 opt: 547 Z-score: 707.8 bits: 138.4 E(): 8.8e-31 Smith-Waterman score: 547; 92.000% identity (96.000% similar) in 100 aa overlap (26-125:365-464) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|119 GVEAVSTLLVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 340 350 360 370 380 390 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED 400 410 420 430 440 450 120 fk1144 PQSSSQVTTS :::::::::: gi|119 PQSSSQVTTS 460 >>gi|12643426|sp|O60779|S19A2_HUMAN Thiamine transporter (497 aa) initn: 547 init1: 547 opt: 547 Z-score: 707.4 bits: 138.4 E(): 9.2e-31 Smith-Waterman score: 547; 92.000% identity (96.000% similar) in 100 aa overlap (26-125:398-497) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|126 LFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 370 380 390 400 410 420 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED 430 440 450 460 470 480 120 fk1144 PQSSSQVTTS :::::::::: gi|126 PQSSSQVTTS 490 >>gi|109019417|ref|XP_001093667.1| PREDICTED: solute car (495 aa) initn: 536 init1: 536 opt: 536 Z-score: 693.3 bits: 135.8 E(): 5.6e-30 Smith-Waterman score: 536; 89.000% identity (96.000% similar) in 100 aa overlap (26-125:396-495) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|109 LFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 370 380 390 400 410 420 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::.::::::::::::::::.::::::::: gi|109 TFIALALQTLLTLIVVDASGLGLEITTQFLIYAGYFALIAVVFLASGAVSIMKKCRKLED 430 440 450 460 470 480 120 fk1144 PQSSSQVTTS :.:::::::: gi|109 PESSSQVTTS 490 >>gi|194210277|ref|XP_001491467.2| PREDICTED: similar to (498 aa) initn: 501 init1: 501 opt: 501 Z-score: 648.4 bits: 127.5 E(): 1.8e-27 Smith-Waterman score: 501; 85.000% identity (94.000% similar) in 100 aa overlap (26-125:399-498) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|194 LFSLLIAATVYIMDTAGTIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 370 380 390 400 410 420 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::.:::.::::::..:::::::: :: :: gi|194 TFIALALQTLLTLIVVDASGLGLEITTQFLIYAGYFAFIAVVFLVNGAVSVMKKYRKQED 430 440 450 460 470 480 120 fk1144 PQSSSQVTTS :.:::::::: gi|194 PESSSQVTTS 490 >>gi|89112748|gb|ABD61002.1| high affinity thiamine tran (490 aa) initn: 498 init1: 498 opt: 498 Z-score: 644.6 bits: 126.8 E(): 2.9e-27 Smith-Waterman score: 498; 83.838% identity (93.939% similar) in 99 aa overlap (26-124:391-489) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|891 LFSLLIAAAVYIMDTVQNIWVCYTSYVVFRIIYMLLITIATFQIAANLSMERYALVFGVN 370 380 390 400 410 420 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::.:::::::::::::::::::::::::::.:::::::::::::.::.:::::: :: gi|891 TFIALVLQTLLTLIVVDASGLGLEITTQFLIYAGYFALIAVVFLASGSVSIMKKCRKQED 430 440 450 460 470 480 120 fk1144 PQSSSQVTTS .:::.::: gi|891 EESSSRVTTL 490 >>gi|73960670|ref|XP_547474.2| PREDICTED: similar to Thi (296 aa) initn: 487 init1: 487 opt: 487 Z-score: 633.2 bits: 123.9 E(): 1.3e-26 Smith-Waterman score: 487; 83.000% identity (93.000% similar) in 100 aa overlap (26-125:197-296) 10 20 30 40 50 fk1144 KGLFMFKDKCLLLFRINIISTPEVILIYSLFYFFLSFQIAANLSMERYALVFGVN .:: :. . .::::::::::::::::::: gi|739 LFSLLIASSVYIMDTVRNIWVCYTSYIIFRIIYMLLITIATFQIAANLSMERYALVFGVN 170 180 190 200 210 220 60 70 80 90 100 110 fk1144 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLED :::::::::::::::::::::::::::::::::::::::::::::.:..:.::: :: :: gi|739 TFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLANGTASIMKKYRKQED 230 240 250 260 270 280 120 fk1144 PQSSSQVTTS .:::.:::: gi|739 AESSSHVTTS 290 125 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 10:39:42 2008 done: Mon Aug 11 10:42:44 2008 Total Scan time: 524.360 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]