hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-10424576/chunk_1/iprscan-20080811-10424576.nocrc
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Query sequence: fk11443
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01770.9.fs   Reduced folate carrier                    75.2    2.8e-23   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01770.9.fs     1/1      12    86 ..   331   418 .]    75.2  2.8e-23

Alignments of top-scoring domains:
PF01770.9.fs: domain 1 of 1, from 12 to 86: score 75.2, E = 2.8e-23
                   *->LvFwmsqlhyvhvseIwvlYllyvlfRgiYQllvpIAtfqiAssLss
                      L+F +  ++     e+++ Y l+++f            fqiA  Ls 
     fk11443    12    LLFRINIIS---TPEVILIYSLFYFFL----------SFQIAANLSM 45   

                   eLfgLvFGiNTFvAlaLqsilTlVViDkrgLgLrvrkqfsl<-*
                   e ++LvFG+NTF+AlaLq++lTl+V+D+ gLgL++ +qf +   
     fk11443    46 ERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLI    86   

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