hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-10485852/chunk_1/iprscan-20080811-10485852.nocrc
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Query sequence: fk11476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                       54.9    8.9e-16   1
PF00168.20.ls C2 domain                                       56.8    6.5e-14   1
PF02845.6.fs CUE domain                                      48.5    8.9e-13   1
PF02845.6.ls CUE domain                                      47.6    3.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/1      86   166 ..     1    88 []    54.9  8.9e-16
PF00168.20.ls   1/1      86   166 ..     1    88 []    56.8  6.5e-14
PF02845.6.fs   1/1     260   295 ..     1    36 [.    48.5  8.9e-13
PF02845.6.ls   1/1     260   302 ..     1    43 []    47.6  3.8e-11

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 1, from 86 to 166: score 54.9, E = 8.9e-16
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikkt.
                      L++tv++Ak  ++   ++  +DPY++++lg      ++ T ++++  
     fk11476    86    LNITVVQAKLAKNYG-MT-RMDPYCRLRLGY----AVYETPTAHNGa 126  

                   lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                    NP+WN + + + +pp +++   +e++D++ f+ dd +  ++   
     fk11476   127 KNPRWNKVIHCT-VPPGVDS-FYLEIFDERAFSMDDRIAWTH    166  

PF00168.20.ls: domain 1 of 1, from 86 to 166: score 56.8, E = 6.5e-14
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikkt.
                      L++tv++Ak  ++   ++  +DPY++++lg      ++ T ++++  
     fk11476    86    LNITVVQAKLAKNYG-MT-RMDPYCRLRLGY----AVYETPTAHNGa 126  

                   lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                    NP+WN + + + +pp +++   +e++D++ f+ dd +  ++   
     fk11476   127 KNPRWNKVIHCT-VPPGVDS-FYLEIFDERAFSMDDRIAWTH    166  

PF02845.6.fs: domain 1 of 1, from 260 to 295: score 48.5, E = 8.9e-13
                   *->vneealhelkemFPqldksvIravLeantgnveati<-*
                      + ee+l+++++mFP++d++vIr vLea++gn +a+i   
     fk11476   260    CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI    295  

PF02845.6.ls: domain 1 of 1, from 260 to 302: score 47.6, E = 3.8e-11
                   *->vneealhelkemFPqldksvIravLeantgnveatinnLLegs<-*
                      + ee+l+++++mFP++d++vIr vLea++gn +a+i + L +    
     fk11476   260    CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAIPSHLVLG    302  

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