hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-10550505/chunk_1/iprscan-20080811-10550505.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11515 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00415.9.ls Regulator of chromosome condensation (RCC1) 116.3 8.1e-32 4 PF00415.9.fs Regulator of chromosome condensation (RCC1) 112.1 1.2e-31 5 PF00651.21.fs BTB/POZ domain 82.5 1.5e-22 2 PF00651.21.ls BTB/POZ domain 69.0 1.4e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00415.9.fs 1/5 122 172 .. 1 68 [] 30.7 3.3e-08 PF00415.9.ls 1/4 122 172 .. 1 68 [] 32.4 1.5e-06 PF00415.9.ls 2/4 175 225 .. 1 68 [] 33.9 5.1e-07 PF00415.9.fs 2/5 175 225 .. 1 68 [] 32.2 1.2e-08 PF00415.9.fs 3/5 228 277 .. 1 68 [] 24.8 1.6e-06 PF00415.9.ls 3/4 228 277 .. 1 68 [] 26.5 8.7e-05 PF00415.9.fs 4/5 280 297 .. 1 20 [. 22.2 8.9e-06 PF00415.9.ls 4/4 280 329 .. 1 68 [] 23.5 0.00071 PF00651.21.fs 1/2 389 492 .. 1 135 [] 67.2 2.8e-18 PF00651.21.ls 1/1 389 492 .. 1 135 [] 69.0 1.4e-17 PF00651.21.fs 2/2 494 524 .. 104 135 .] 15.3 0.00086 Alignments of top-scoring domains: PF00415.9.fs: domain 1 of 5, from 122 to 172: score 30.7, E = 3.3e-08 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+++G + + qLG g++ + vP + fk11515 122 EGEVFTWGH--NAYSQLGNGTTNHGL-----------VPCHI----S 151 ssslsekVvsvasGgqHtval<-* + V va+G +H +l fk11515 152 TNLSNKQVIEVACGSYHSLVL 172 PF00415.9.ls: domain 1 of 4, from 122 to 172: score 32.4, E = 1.5e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+++G + + qLG g++ + vP + fk11515 122 EGEVFTWGH--NAYSQLGNGTTNHGL-----------VPCHI----S 151 ssslsekVvsvasGgqHtval<-* + V va+G +H +l fk11515 152 TNLSNKQVIEVACGSYHSLVL 172 PF00415.9.ls: domain 2 of 4, from 175 to 225: score 33.9, E = 5.1e-07 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG V+++G ++ Gq G g +v +P v + fk11515 175 DGEVFAWGY--NNSGQVGSGSTVNQP-----------IPRRV----T 204 ssslsekVvsvasGgqHtval<-* + + +Vv a+G + a+ fk11515 205 GCLQNKVVVTIACGQMCCMAV 225 PF00415.9.fs: domain 2 of 5, from 175 to 225: score 32.2, E = 1.2e-08 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG V+++G ++ Gq G g +v +P v + fk11515 175 DGEVFAWGY--NNSGQVGSGSTVNQP-----------IPRRV----T 204 ssslsekVvsvasGgqHtval<-* + + +Vv a+G + a+ fk11515 205 GCLQNKVVVTIACGQMCCMAV 225 PF00415.9.fs: domain 3 of 5, from 228 to 277: score 24.8, E = 1.6e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G VY +G + nGqLGlg + P v fk11515 228 TGEVYVWGY--NGNGQLGLGNSGNQP-----------TPCRV----- 256 ssslsekVvsvasGgqHtval<-* +V+ va+G Ht +l fk11515 257 AALQGIRVQRVACGYAHTLVL 277 PF00415.9.ls: domain 3 of 4, from 228 to 277: score 26.5, E = 8.7e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G VY +G + nGqLGlg + P v fk11515 228 TGEVYVWGY--NGNGQLGLGNSGNQP-----------TPCRV----- 256 ssslsekVvsvasGgqHtval<-* +V+ va+G Ht +l fk11515 257 AALQGIRVQRVACGYAHTLVL 277 PF00415.9.fs: domain 4 of 5, from 280 to 297: score 22.2, E = 8.9e-06 *->dGrVYslGcFRgenGqLGlg<-* +G+VY++G + +GqLG+g fk11515 280 EGQVYAWGA--NSYGQLGTG 297 PF00415.9.ls: domain 4 of 4, from 280 to 329: score 23.5, E = 0.00071 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G+VY++G + +GqLG+g s Pv v fk11515 280 EGQVYAWGA--NSYGQLGTGNKSNQSY---------PTPVTV----- 310 ssslsekVvsvasGgqHtval<-* + ++ +a+ Ht a fk11515 311 --EKDRIIEIAACHSTHTSAA 329 PF00651.21.fs: domain 1 of 2, from 389 to 492: score 67.2, E = 2.8e-18 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l+ +++ + D ++v+ gk ++AHK+ L + + F++ fk11515 389 LKREFDNPDTADLKFLVD--------GKYIYAHKVLLKIRCEHFRSS 427 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks ++++ e + ++e++++s+ + +a+Le++Yt+ +s++ fk11515 428 LEDN--------EDD---IVEMSEFSYPVYRAFLEYLYTDSISLS----- 461 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +e ++ lL +A +++ +l+++C + +++ + fk11515 462 ------PEEAVGLLDLA-TFYRENRLKKLCQQTIKQGI 492 PF00651.21.ls: domain 1 of 1, from 389 to 492: score 69.0, E = 1.4e-17 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l+ +++ + D ++v+ gk ++AHK+ L + + F++ fk11515 389 LKREFDNPDTADLKFLVD--------GKYIYAHKVLLKIRCEHFRSS 427 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks ++++ e + ++e++++s+ + +a+Le++Yt+ +s++ fk11515 428 LEDN--------EDD---IVEMSEFSYPVYRAFLEYLYTDSISLS----- 461 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +e ++ lL +A +++ +l+++C + +++ + fk11515 462 ------PEEAVGLLDLA-TFYRENRLKKLCQQTIKQGI 492 PF00651.21.fs: domain 2 of 2, from 494 to 524: score 15.3, E = 0.00086 *->eenvedlLaaAadllqipslvdaCeefliksl<-* een+ +lL+aA +++ ++l + C +f+i++l fk11515 494 EENAIALLSAA-VKYDAQDLEEFCFRFCINHL 524 //