hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13031431/chunk_1/iprscan-20090618-13031431.nocrc
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Query sequence: fk11601
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00240.13.fs Ubiquitin family                               63.7    2.6e-17   1
PF00240.13.ls Ubiquitin family                               65.6    1.5e-16   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00240.13.fs   1/1      83   150 ..     1    78 []    63.7  2.6e-17
PF00240.13.ls   1/1      83   150 ..     1    78 []    65.6  1.5e-16

Alignments of top-scoring domains:
PF00240.13.fs: domain 1 of 1, from 83 to 150: score 63.7, E = 2.6e-17
                   *->KtldgkgfatdgstitlevdpsdTVlelKekIeekegipvdqQrLiy
                      Ktld +       t t+ v     V+e+Ke+I++   ip ++QrLiy
     fk11601    83    KTLDSQ-------TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 122  

                   sGkvLreDdrtLseYniqdgsftlhlvlrlr<-*
                   +G+vL +Dd+ L+eYn+   + ++hlv r +   
     fk11601   123 QGRVL-QDDKKLQEYNVGG-K-VIHLVERAP    150  

PF00240.13.ls: domain 1 of 1, from 83 to 150: score 65.6, E = 1.5e-16
                   *->KtldgkgfatdgstitlevdpsdTVlelKekIeekegipvdqQrLiy
                      Ktld +       t t+ v     V+e+Ke+I++   ip ++QrLiy
     fk11601    83    KTLDSQ-------TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 122  

                   sGkvLreDdrtLseYniqdgsftlhlvlrlr<-*
                   +G+vL +Dd+ L+eYn+   + ++hlv r +   
     fk11601   123 QGRVL-QDDKKLQEYNVGG-K-VIHLVERAP    150  

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