hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11183830/chunk_1/iprscan-20080811-11183830.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11804 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 153.8 1.7e-49 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 155.6 1.2e-43 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/1 129 461 .. 1 318 [] 153.8 1.7e-49 PF00443.19.ls 1/1 129 461 .. 1 318 [] 155.6 1.2e-43 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 1, from 129 to 461: score 153.8, E = 1.7e-49 RF xxxxxxxxxxxxxxxxxxxx xxxxxxx xxxxxxxxx *->pgptGLvNlGNTCYmNSvLQ..........cLfsipp.lrdyflsds ++++GL NlG+TCY N LQ + + +++L+ +p++ dy+l d fk11804 129 NSFVGLTNLGATCYVNTFLQvwflnlelrqALYLCPStCSDYMLGDG 175 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx yeseinesnplgskgsllcaladLfnalqsg.yksvapsplkflkqfklt + e+ + + ++++l+ Lf+ lq+++++++ ps fk11804 176 IQEEK-----DYEPQTICEHLQYLFALLQNSnRRYIDPSG---------- 210 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lgkineefsgymQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd ++ +++++QQDA+EF + L++ l++ fk11804 211 -FVKALGLDTGQQQDAQEFSKLFMSLLEDTLSK----------------- 242 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx kaaeawknhltrnesiitdlFqGqlks....................... ++ + +i+++ F G++ + +++++++++ ++ + + + fk11804 243 -------QKNPDVRNIVQQQFCGEYAYvtvcnqcgreskllskfyeleln 285 RF xxxxxxxxxxx .......................................klkikrLPpvL +++++ +++ ++ ++++ +++++ +++++++++ ++k+++ +LP +L fk11804 286 iqghkqltdciseflkeeklegdnryfcencqskqnatrKIRLLSLPCTL 335 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevlrkdek ++L+RF ++++tg +kK+++ + f ++Ld+ +y ++ fk11804 336 NLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKG----------- 374 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGssls ++++YeL aV++H G+s++ fk11804 375 -------------------------------GSYVYELSAVLIHRGVSAY 393 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx sGHYiayikkkkengkWykfDDekVsevteeevle............... sGHYia++k ++ g+Wykf+De ++ + + + + +++ ++++++++ fk11804 394 SGHYIAHVK-DPQSGEWYKFNDEDIEKMEGKKLQLgieedlaepsksqtr 442 RF xxxxxxxxxx .........rsssAYiLFY<-* +++ +++++ s++AY+L+Y fk11804 443 kpkcgkgthCSRNAYMLVY 461 PF00443.19.ls: domain 1 of 1, from 129 to 461: score 155.6, E = 1.2e-43 RF xxxxxxxxxxxxxxxxxxxx xxxxxxx xxxxxxxxx *->pgptGLvNlGNTCYmNSvLQ..........cLfsipp.lrdyflsds ++++GL NlG+TCY N LQ + + +++L+ +p++ dy+l d fk11804 129 NSFVGLTNLGATCYVNTFLQvwflnlelrqALYLCPStCSDYMLGDG 175 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx yeseinesnplgskgsllcaladLfnalqsg.yksvapsplkflkqfklt + e+ + + ++++l+ Lf+ lq+++++++ ps fk11804 176 IQEEK-----DYEPQTICEHLQYLFALLQNSnRRYIDPSG---------- 210 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lgkineefsgymQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd ++ +++++QQDA+EF + L++ l++ fk11804 211 -FVKALGLDTGQQQDAQEFSKLFMSLLEDTLSK----------------- 242 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx kaaeawknhltrnesiitdlFqGqlks....................... ++ + +i+++ F G++ + +++++++++ ++ + + + fk11804 243 -------QKNPDVRNIVQQQFCGEYAYvtvcnqcgreskllskfyeleln 285 RF xxxxxxxxxxx .......................................klkikrLPpvL +++++ +++ ++ ++++ +++++ +++++++++ ++k+++ +LP +L fk11804 286 iqghkqltdciseflkeeklegdnryfcencqskqnatrKIRLLSLPCTL 335 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iihLKRFsyngetglnkKiddkVefPleLdlssycnaelkekevlrkdek ++L+RF ++++tg +kK+++ + f ++Ld+ +y ++ fk11804 336 NLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKG----------- 374 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ieklkeerqrdedgnneeepeeeedneegenpptkYeLyaVvvHsGssls ++++YeL aV++H G+s++ fk11804 375 -------------------------------GSYVYELSAVLIHRGVSAY 393 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx sGHYiayikkkkengkWykfDDekVsevteeevle............... sGHYia++k ++ g+Wykf+De ++ + + + + +++ ++++++++ fk11804 394 SGHYIAHVK-DPQSGEWYKFNDEDIEKMEGKKLQLgieedlaepsksqtr 442 RF xxxxxxxxxx .........rsssAYiLFY<-* +++ +++++ s++AY+L+Y fk11804 443 kpkcgkgthCSRNAYMLVY 461 //