hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-13103235/chunk_1/iprscan-20090618-13103235.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11832 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03731.5.ls Ku70/Ku80 N-terminal alpha/beta domain 331.6 1.3e-96 1 PF03731.5.fs Ku70/Ku80 N-terminal alpha/beta domain 329.7 4.7e-96 1 PF08785.1.fs Ku C terminal domain like 261.7 4.3e-78 1 PF08785.1.ls Ku C terminal domain like 263.6 3.7e-76 1 PF02735.6.fs Ku70/Ku80 beta-barrel domain 221.6 3e-65 1 PF02735.6.ls Ku70/Ku80 beta-barrel domain 223.6 4.2e-64 1 PF03730.4.ls Ku70/Ku80 C-terminal arm 149.1 1.1e-41 1 PF03730.4.fs Ku70/Ku80 C-terminal arm 147.2 4e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03731.5.ls 1/1 33 268 .. 1 276 [] 331.6 1.3e-96 PF03731.5.fs 1/1 33 268 .. 1 276 [] 329.7 4.7e-96 PF02735.6.ls 1/1 275 484 .. 1 229 [] 223.6 4.2e-64 PF02735.6.fs 1/1 275 484 .. 1 229 [] 221.6 3e-65 PF03730.4.fs 1/1 499 595 .. 1 102 [] 147.2 4e-41 PF03730.4.ls 1/1 499 595 .. 1 102 [] 149.1 1.1e-41 PF08785.1.ls 1/1 614 733 .. 1 134 [] 263.6 3.7e-76 PF08785.1.fs 1/1 614 733 .. 1 134 [] 261.7 4.3e-78 Alignments of top-scoring domains: PF03731.5.ls: domain 1 of 1, from 33 to 268: score 331.6, E = 1.3e-96 *->avvFliDaspaMfesvkgseafllkkSpFeqalkcirelllrkiisn avv+++D++ +M++s++g e+ pFeqa+k+i+++++r+++++ fk11832 33 AVVLCMDVGFTMSNSIPGIES------PFEQAKKVITMFVQRQVFAE 73 dktDligvvlygTdesenkLersegfeNvtvLrsfeaedldlpgaellke +k D+i++vl+gTd ++n+L+++++++N+tv+r +l+lp+++ll++ fk11832 74 NK-DEIALVLFGTDGTDNPLSGGDQYQNITVHR-----HLMLPDFDLLED 117 ldqfleqgekgladvfkfkgdssqgdllsaLwvcmdldldlqkqtgkkkl +++++++ +s+q+d+l+aL+v+md+ +q++t++kk+ fk11832 118 IESKIQP-------------GSQQADFLDALIVSMDV---IQHETIGKKF 151 skkrillfTnlddPfespfegvdddkldtilqkLlkadItlqfflpfSvd k++i++fT+l++ f ++++ld+i++ L+k+dI+lqfflpfS++ fk11832 152 EKRHIEIFTDLSSRF-------SKSQLDIIIHSLKKCDISLQFFLPFSLG 194 aeDlrdegielnllhLVEavpndkkfdpnifYkeilklgedeenevmlsl +eD + +++ + + ++++++p ++++e++k+g +++++vm+sl fk11832 195 KEDGSGDRGDGPFRLG-----GHGPSFPLKGITEQQKEGLEIVKMVMISL 239 egedglakivkledllsrlrakktakRal<-* egedgl++i++++++l++l+++k+++R+ fk11832 240 EGEDGLDEIYSFSESLRKLCVFKKIERHS 268 PF03731.5.fs: domain 1 of 1, from 33 to 268: score 329.7, E = 4.7e-96 *->avvFliDaspaMfesvkgseafllkkSpFeqalkcirelllrkiisn avv+++D++ +M++s++g e+ pFeqa+k+i+++++r+++++ fk11832 33 AVVLCMDVGFTMSNSIPGIES------PFEQAKKVITMFVQRQVFAE 73 dktDligvvlygTdesenkLersegfeNvtvLrsfeaedldlpgaellke +k D+i++vl+gTd ++n+L+++++++N+tv+r +l+lp+++ll++ fk11832 74 NK-DEIALVLFGTDGTDNPLSGGDQYQNITVHR-----HLMLPDFDLLED 117 ldqfleqgekgladvfkfkgdssqgdllsaLwvcmdldldlqkqtgkkkl +++++++ +s+q+d+l+aL+v+md+ +q++t++kk+ fk11832 118 IESKIQP-------------GSQQADFLDALIVSMDV---IQHETIGKKF 151 skkrillfTnlddPfespfegvdddkldtilqkLlkadItlqfflpfSvd k++i++fT+l++ f ++++ld+i++ L+k+dI+lqfflpfS++ fk11832 152 EKRHIEIFTDLSSRF-------SKSQLDIIIHSLKKCDISLQFFLPFSLG 194 aeDlrdegielnllhLVEavpndkkfdpnifYkeilklgedeenevmlsl +eD + +++ + + ++++++p ++++e++k+g +++++vm+sl fk11832 195 KEDGSGDRGDGPFRLG-----GHGPSFPLKGITEQQKEGLEIVKMVMISL 239 egedglakivkledllsrlrakktakRal<-* egedgl++i++++++l++l+++k+++R+ fk11832 240 EGEDGLDEIYSFSESLRKLCVFKKIERHS 268 PF02735.6.ls: domain 1 of 1, from 275 to 484: score 223.6, E = 4.2e-64 *->lslGilplVsipVkvyynateeaekpfhvqlyreteekneevrvktr l++G +++si + y++ +e+ k+++++++++t +k+++ +++++ fk11832 275 LTIG--SNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVY 319 kvneetgkSvlevepedivKgYGEryGgdyvvlsdeeleqvkpestgpgl ++n ++++ ev++edi++g+ ryG+d+v++s+++ eq+k++s+g+++ fk11832 320 CLNDDDET---EVLKEDIIQGF--RYGSDIVPFSKVDEEQMKYKSEGKCF 364 eilGFvplsslidyyyldpsyflvPddkggeGStkafsaLreallesdka +lGF+++s++ + ++++ ++ v++++++e++++a+s+L +al+ +d++ fk11832 365 SVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMV 414 AIaryvlrrksrprlvaLrPqeeekrDdqkiqdtpVeglvlvtLpfadev AI+ry+++++ +p++++ P+ + + e+lv+v+Lpf+++ fk11832 415 AIVRYAYDKRANPQVGVAFPHIK---------HNY-ECLVYVQLPFMEDL 454 RDsldflelnpakttekpteeqldlakqlidk<-* R +++f++l+++k+ pte+ql++ ++lid+ fk11832 455 R-QYMFSSLKNSKK-YAPTEAQLNAVDALIDS 484 PF02735.6.fs: domain 1 of 1, from 275 to 484: score 221.6, E = 3e-65 *->lslGilplVsipVkvyynateeaekpfhvqlyreteekneevrvktr l++G +++si + y++ +e+ k+++++++++t +k+++ +++++ fk11832 275 LTIG--SNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVY 319 kvneetgkSvlevepedivKgYGEryGgdyvvlsdeeleqvkpestgpgl ++n ++++ ev++edi++g+ ryG+d+v++s+++ eq+k++s+g+++ fk11832 320 CLNDDDET---EVLKEDIIQGF--RYGSDIVPFSKVDEEQMKYKSEGKCF 364 eilGFvplsslidyyyldpsyflvPddkggeGStkafsaLreallesdka +lGF+++s++ + ++++ ++ v++++++e++++a+s+L +al+ +d++ fk11832 365 SVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMV 414 AIaryvlrrksrprlvaLrPqeeekrDdqkiqdtpVeglvlvtLpfadev AI+ry+++++ +p++++ P+ + + e+lv+v+Lpf+++ fk11832 415 AIVRYAYDKRANPQVGVAFPHIK---------HNY-ECLVYVQLPFMEDL 454 RDsldflelnpakttekpteeqldlakqlidk<-* R +++f++l+++k+ pte+ql++ ++lid+ fk11832 455 R-QYMFSSLKNSKK-YAPTEAQLNAVDALIDS 484 PF03730.4.fs: domain 1 of 1, from 499 to 595: score 147.2, E = 4e-41 *->dsYnpdkfpNPRvLQrhyqcLealaLdleeplpplDqhilnmletlp d++++ k+pNP +Qr++qcL+++aL++ eplpp++qhi+nml+++ fk11832 499 DLFPTTKIPNP-RFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPA 544 keeamnkrpigklkeeFklnvypkkkdqktekdifkrkqdgsreapdaKk ++ ++++p++k+k++F+l++++kk dq+t+++if+++++++ p+aKk fk11832 545 EVTTKSQIPLSKIKTLFPLIEAKKK-DQVTAQEIFQDNHEDG---PTAKK 590 aKied<-* K+e+ fk11832 591 LKTEQ 595 PF03730.4.ls: domain 1 of 1, from 499 to 595: score 149.1, E = 1.1e-41 *->dsYnpdkfpNPRvLQrhyqcLealaLdleeplpplDqhilnmletlp d++++ k+pNP +Qr++qcL+++aL++ eplpp++qhi+nml+++ fk11832 499 DLFPTTKIPNP-RFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPA 544 keeamnkrpigklkeeFklnvypkkkdqktekdifkrkqdgsreapdaKk ++ ++++p++k+k++F+l++++kk dq+t+++if+++++++ p+aKk fk11832 545 EVTTKSQIPLSKIKTLFPLIEAKKK-DQVTAQEIFQDNHEDG---PTAKK 590 aKied<-* K+e+ fk11832 591 LKTEQ 595 PF08785.1.ls: domain 1 of 1, from 614 to 733: score 263.6, E = 3.7e-76 *->GsvNPaqDFeaLlrqrdksDWfekAitQLknrIeqLledsletdyyq GsvNPa++F++L++q+++s fe+A++QL+n+Ieq+l+++ et+y++ fk11832 614 GSVNPAENFRVLVKQKKAS--FEEASNQLINHIEQFLDTN-ETPYFM 657 KaieCikAfReecikesepeqFNeFLksLkekvqerqladFWellvqgvt K+i+Ci+AfRee+ik+se+++FN+FLk+L+ekv+++ql++FWe++vq fk11832 658 KSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQ--- 704 siLGEkkitLIskdEaegSdVtdEeAkqFLvfeqkke<-* ++itLI+k+Ea+gS+Vt+EeAk+FL+ +k+ fk11832 705 -----DGITLITKEEASGSSVTAEEAKKFLA---PKD 733 PF08785.1.fs: domain 1 of 1, from 614 to 733: score 261.7, E = 4.3e-78 *->GsvNPaqDFeaLlrqrdksDWfekAitQLknrIeqLledsletdyyq GsvNPa++F++L++q+++s fe+A++QL+n+Ieq+l+++ et+y++ fk11832 614 GSVNPAENFRVLVKQKKAS--FEEASNQLINHIEQFLDTN-ETPYFM 657 KaieCikAfReecikesepeqFNeFLksLkekvqerqladFWellvqgvt K+i+Ci+AfRee+ik+se+++FN+FLk+L+ekv+++ql++FWe++vq fk11832 658 KSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQ--- 704 siLGEkkitLIskdEaegSdVtdEeAkqFLvfeqkke<-* ++itLI+k+Ea+gS+Vt+EeAk+FL+ +k+ fk11832 705 -----DGITLITKEEASGSSVTAEEAKKFLA---PKD 733 //