hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13103235/chunk_1/iprscan-20090618-13103235.nocrc
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Query sequence: fk11832
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00559                                                 170.2      2e-46   1
SM00327                                                  48.0    1.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00327    1/1      31   273 ..     1   193 []    48.0  1.2e-09
SM00559    1/1     326   465 ..     1   155 []   170.2    2e-46

Alignments of top-scoring domains:
SM00327: domain 1 of 1, from 31 to 273: score 48.0, E = 1.2e-09
                   *->plDvvfllDgSgSmg......gnrfekvkefv.klveqld....gdr
                      ++ vv+++D+   m+++ ++ ++ fe++k++++++v++    +++d 
     fk11832    31    KAAVVLCMDVGFTMSnsipgiESPFEQAKKVItMFVQRQVfaenKDE 77   

                   vglvqFss..........dvrvefpln....sqskdallealaslsykgl
                   ++lv+F++++++++ +++d++  ++++++   +++d l+++  ++++   
     fk11832    78 IALVLFGTdgtdnplsggDQYQNITVHrhlmLPDFDLLEDIESKIQP--- 124  

                   kdyslgggTnlg.ALqyalenlfsesagrrgagratkiSnvpkvliliTD
                       +++  ++ +AL   ++++++e+ g++++         ++++ ++TD
     fk11832   125 ----GSQQADFLdALIVSMDVIQHETIGKKFE---------KRHIEIFTD 161  

                   Gesndg...........................................g
                     s +++++ +   ++ ++ + + +   + + +++++++++++++ + +g
     fk11832   162 LSSRFSksqldiiihslkkcdislqfflpfslgkedgsgdrgdgpfrlgG 211  

                   ddpedileaakelkrsg...vkvfvigvgna.de.elkeiasep.gehvf
                   ++p+ +l+ + e++++g + vk++ i + + +  +e+  ++   + + vf
     fk11832   212 HGPSFPLKGITEQQKEGleiVKMVMISLEGEdGLdEIYSFSESLrKLCVF 261  

                   fdvsdvedlpslldllidlll<-*
                   +         ++ ++ i++++   
     fk11832   262 K---------KIERHSIHWPC    273  

SM00559: domain 1 of 1, from 326 to 465: score 170.2, E = 2e-46
                   *->gkevkpedivkgYeyGkgryvvlsdqdeleqlkyksedpgleilGFv
                      + ev++edi++g++yG +++v++s+ +++eq+kykse++++ +lGF+
     fk11832   326    ETEVLKEDIIQGFRYG-SDIVPFSK-VDEEQMKYKSEGKCFSVLGFC 370  

                   plselppyyflkpsyflvPddksvegstkafsaLleaLletnkiAIarfv
                   ++s++ + +f++ ++  v++ +++e +++a+s+L++aL  ++++AI+r++
     fk11832   371 KSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYA 420  

                   lrtksnrprLvaLrPyeeekddqdsqkkppltveglvlvqLPFaDdvRkl
                   + +++n p++++ +P+ +  ++          +e+lv+vqLPF++d+R++
     fk11832   421 YDKRAN-PQVGVAFPHIK--HN----------YECLVYVQLPFMEDLRQY 457  

                   dflelnpt<-*
                   +f++l+++   
     fk11832   458 MFSSLKNS    465  

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