hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-11272236/chunk_1/iprscan-20080811-11272236.nocrc
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Query sequence: fk11845
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00176.13.ls SNF2 family N-terminal domain                  477.2   1.9e-140   1
PF00176.13.fs SNF2 family N-terminal domain                  475.3   6.8e-140   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1     860  1186 ..     1   355 []   475.3 6.8e-140
PF00176.13.ls   1/1     860  1186 ..     1   355 []   477.2 1.9e-140

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 860 to 1186: score 475.3, E = 6.8e-140
                   *->YQleGvnWLislyknlvket.dslglggILADEMGLGKTlQtIslla
                      +Q++Gv++++++++++vk+t++s+g+g+ILA++MGLGKTlQ++s+l+
     fk11845   860    HQVDGVQFMWDCCCESVKKTkKSPGSGCILAHCMGLGKTLQVVSFLH 906  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekw...apddlnivvyyg
                   +++ +++++   ++++LvVcPl+t  nW+nEfekw+++++dd +++v ++
     fk11845   907 TVLLCDKLD---FSTALVVCPLNTALNWMNEFEKWqegLKDDEKLEVSEL 953  

                   dgnsrdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLl........
                   +  +r+q+r+++l +++++dg     +v+i++Ye++r+  L+++++ +++
     fk11845   954 ATVKRPQERSYML-QRWQEDG-----GVMIIGYEMYRN--LAqgrnvksr 995  

                   kdkdeLkklfinw....ryvilDEGHHriKNedSklrkskalkklkhann
                   k k+ ++k  + +++++++v++DEG H++KNe+S++  ska+++++ +++
     fk11845   996 KLKEIFNK--ALVdpgpDFVVCDEG-HILKNEASAV--SKAMNSIR-SRR 1039 

                   RLlLTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpia
                   R++LTGTPlQNnL E+++++nF++ +++gs        k+F+++f+npi+
     fk11845  1040 RIILTGTPLQNNLIEYHCMVNFIKENLLGSI-------KEFRNRFINPIQ 1082 

                   eggdsavLadatefLrykkeveeglklinrLhkilkpflLRRlKkdveks
                   +g++    ad+t     +++v+ ++k+++ L+++l  +++R++++ + k+
     fk11845  1083 NGQC----ADST-----MVDVRVMKKRAHILYEMLAGCVQRKDYTALTKF 1123 

                   LpppeKteyvlfcelsklQkelYkkflkeeskdvkaindserreggkekn
                   Lpp  K+eyvl ++++++Q++lY+++l   ++   ++n+se   gg++  
     fk11845  1124 LPP--KHEYVLAVRMTSIQCKLYQYYL---DHLTGVGNNSE---GGRG-- 1163 

                   egksrllnlimqLrKicNfHPyLf<-*
                   +  ++l++++++L +i+  HP+++   
     fk11845  1164 KAGAKLFQDFQMLSRIWT-HPWCL    1186 

PF00176.13.ls: domain 1 of 1, from 860 to 1186: score 477.2, E = 1.9e-140
                   *->YQleGvnWLislyknlvket.dslglggILADEMGLGKTlQtIslla
                      +Q++Gv++++++++++vk+t++s+g+g+ILA++MGLGKTlQ++s+l+
     fk11845   860    HQVDGVQFMWDCCCESVKKTkKSPGSGCILAHCMGLGKTLQVVSFLH 906  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekw...apddlnivvyyg
                   +++ +++++   ++++LvVcPl+t  nW+nEfekw+++++dd +++v ++
     fk11845   907 TVLLCDKLD---FSTALVVCPLNTALNWMNEFEKWqegLKDDEKLEVSEL 953  

                   dgnsrdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLl........
                   +  +r+q+r+++l +++++dg     +v+i++Ye++r+  L+++++ +++
     fk11845   954 ATVKRPQERSYML-QRWQEDG-----GVMIIGYEMYRN--LAqgrnvksr 995  

                   kdkdeLkklfinw....ryvilDEGHHriKNedSklrkskalkklkhann
                   k k+ ++k  + +++++++v++DEG H++KNe+S++  ska+++++ +++
     fk11845   996 KLKEIFNK--ALVdpgpDFVVCDEG-HILKNEASAV--SKAMNSIR-SRR 1039 

                   RLlLTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpia
                   R++LTGTPlQNnL E+++++nF++ +++gs        k+F+++f+npi+
     fk11845  1040 RIILTGTPLQNNLIEYHCMVNFIKENLLGSI-------KEFRNRFINPIQ 1082 

                   eggdsavLadatefLrykkeveeglklinrLhkilkpflLRRlKkdveks
                   +g++    ad+t     +++v+ ++k+++ L+++l  +++R++++ + k+
     fk11845  1083 NGQC----ADST-----MVDVRVMKKRAHILYEMLAGCVQRKDYTALTKF 1123 

                   LpppeKteyvlfcelsklQkelYkkflkeeskdvkaindserreggkekn
                   Lpp  K+eyvl ++++++Q++lY+++l   ++   ++n+se   gg++  
     fk11845  1124 LPP--KHEYVLAVRMTSIQCKLYQYYL---DHLTGVGNNSE---GGRG-- 1163 

                   egksrllnlimqLrKicNfHPyLf<-*
                   +  ++l++++++L +i+  HP+++   
     fk11845  1164 KAGAKLFQDFQMLSRIWT-HPWCL    1186 

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