hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-11272236/chunk_1/iprscan-20080811-11272236.nocrc
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Query sequence: fk11845
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                  97.7    1.4e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     853  1073 ..     1   219 []    97.7  1.4e-24

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 853 to 1073: score 97.7, E = 1.4e-24
                   *->gf.klrpyQkeaipwlleg.............rdvilaapTGsGKTl
                         kl p+Q  ++++++++  ++ ++++++++ ++ila+ +G+GKTl
     fk11845   853    MViKLKPHQVDGVQFMWDCccesvkktkkspgSGCILAHCMGLGKTL 899  

                   afllpllellkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpsl
                   + + +l+  l+++k       +  ++Lv++P    a +w++e++k+ ++l
     fk11845   900 QVVSFLHTVLLCDKL------DFSTALVVCP-LNTALNWMNEFEKWQEGL 942  

                   gv.yfvevlkvvglygG.sktke.keqlrklksgktdilvtTpg......
                    ++ +   l+v  l + +++ +e+ + l++++++   + +  ++  ++  
     fk11845   943 KDdEK---LEVSELATVkRP-QErSYMLQRWQEDG-GVMIIGYEmyrnla 987  

                   .......rLldll.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdql
                   ++++ ++r l+++ n+  l  +  d+v++DE+H l+        + ++ +
     fk11845   988 qgrnvksRKLKEIfNKA-LVDpGPDFVVCDEGHILK--------NEASAV 1028 

                   e.llkrlpknrqrlllSATppeienllklflnlpelfpnpvfisvgftle
                    ++++ + ++r+r++l++Tp  ++n+l ++         + fi+    l 
     fk11845  1029 SkAMNSI-RSRRRIILTGTP--LQNNLIEYHC------MVNFIKENL-LG 1068 

                   pieqf<-*
                    i++f   
     fk11845  1069 SIKEF    1073 

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