hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11334371/chunk_1/iprscan-20080811-11334371.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11940 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 621.0 9.5e-184 18 PF00096.16.fs Zinc finger, C2H2 type 585.6 4.4e-173 18 PF01096.9.fs Transcription factor S-II (TFIIS) 94.0 2.1e-28 16 PF01352.17.fs KRAB box 99.0 1.6e-27 1 PF01352.17.ls KRAB box 101.0 3.3e-27 1 PF01286.9.fs XPA protein N-terminal 68.4 9.4e-19 17 PF07754.2.fs Domain of unknown function (DUF1610) 49.2 3.5e-12 14 PF02892.5.fs BED zinc finger 35.5 8.6e-10 10 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 27.1 5.1e-08 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 23 63 .. 1 41 [] 101.0 3.3e-27 PF01352.17.fs 1/1 23 63 .. 1 41 [] 99.0 1.6e-27 PF00096.16.fs 1/18 201 223 .. 1 24 [] 29.2 5.1e-06 PF00096.16.ls 1/18 201 223 .. 1 24 [] 31.1 3.6e-06 PF00096.16.fs 2/18 229 251 .. 1 24 [] 27.4 1.4e-05 PF00096.16.ls 2/18 229 251 .. 1 24 [] 29.4 1.2e-05 PF00096.16.ls 3/18 257 279 .. 1 24 [] 37.6 3.9e-08 PF00096.16.fs 3/18 257 279 .. 1 24 [] 35.7 1.2e-07 PF00096.16.fs 4/18 285 307 .. 1 24 [] 32.6 7e-07 PF00096.16.ls 4/18 285 307 .. 1 24 [] 34.6 3.2e-07 PF00096.16.fs 5/18 313 335 .. 1 24 [] 34.5 2.4e-07 PF00096.16.ls 5/18 313 335 .. 1 24 [] 36.5 8.6e-08 PF00096.16.fs 6/18 341 363 .. 1 24 [] 29.3 4.7e-06 PF00096.16.ls 6/18 341 363 .. 1 24 [] 31.3 3.2e-06 PF00096.16.ls 7/18 369 391 .. 1 24 [] 33.4 7.1e-07 PF00096.16.fs 7/18 369 391 .. 1 24 [] 31.5 1.4e-06 PF00096.16.fs 8/18 397 419 .. 1 24 [] 37.8 3.5e-08 PF00096.16.ls 8/18 397 419 .. 1 24 [] 39.8 9e-09 PF00096.16.fs 9/18 425 447 .. 1 24 [] 28.9 5.9e-06 PF00096.16.ls 9/18 425 447 .. 1 24 [] 30.9 4.2e-06 PF00096.16.ls 10/18 453 475 .. 1 24 [] 38.2 2.7e-08 PF00096.16.fs 10/18 453 475 .. 1 24 [] 36.2 9.1e-08 PF00096.16.ls 11/18 481 503 .. 1 24 [] 37.9 3.1e-08 PF00096.16.fs 11/18 481 503 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 12/18 509 531 .. 1 24 [] 35.7 1.4e-07 PF00096.16.fs 12/18 509 531 .. 1 24 [] 33.8 3.6e-07 PF00096.16.fs 13/18 537 559 .. 1 24 [] 29.1 5.3e-06 PF00096.16.ls 13/18 537 559 .. 1 24 [] 31.1 3.7e-06 PF00096.16.ls 14/18 565 587 .. 1 24 [] 35.4 1.9e-07 PF00096.16.fs 14/18 565 587 .. 1 24 [] 33.4 4.5e-07 PF00096.16.ls 15/18 593 615 .. 1 24 [] 36.0 1.2e-07 PF00096.16.fs 15/18 593 615 .. 1 24 [] 34.1 3.1e-07 PF00096.16.ls 16/18 621 643 .. 1 24 [] 37.5 4.2e-08 PF00096.16.fs 16/18 621 643 .. 1 24 [] 35.6 1.3e-07 PF00096.16.fs 17/18 649 671 .. 1 24 [] 31.4 1.5e-06 PF00096.16.ls 17/18 649 671 .. 1 24 [] 33.3 7.7e-07 PF00096.16.fs 18/18 677 699 .. 1 24 [] 29.3 4.8e-06 PF00096.16.ls 18/18 677 699 .. 1 24 [] 31.2 3.3e-06 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 23 to 63: score 101.0, E = 3.3e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dFtqEEW++LdpaQr+LYr+VMlENy+nL+ +g fk11940 23 VTFKDVAIDFTQEEWKRLDPAQRKLYRNVMLENYNNLITVG 63 PF01352.17.fs: domain 1 of 1, from 23 to 63: score 99.0, E = 1.6e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dFtqEEW++LdpaQr+LYr+VMlENy+nL+ +g fk11940 23 VTFKDVAIDFTQEEWKRLDPAQRKLYRNVMLENYNNLITVG 63 PF00096.16.fs: domain 1 of 18, from 201 to 223: score 29.2, E = 5.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F++ +L rHlr+H fk11940 201 FKCN-HCGKGFNQTLDLIRHLRIH 223 PF00096.16.ls: domain 1 of 18, from 201 to 223: score 31.1, E = 3.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F++ +L rHlr+H fk11940 201 FKCN-HCGKGFNQTLDLIRHLRIH 223 PF00096.16.fs: domain 2 of 18, from 229 to 251: score 27.4, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+Fs+k+ L +H ++H fk11940 229 YECS-NCRKAFSHKEKLIKHYKIH 251 PF00096.16.ls: domain 2 of 18, from 229 to 251: score 29.4, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+Fs+k+ L +H ++H fk11940 229 YECS-NCRKAFSHKEKLIKHYKIH 251 PF00096.16.ls: domain 3 of 18, from 257 to 279: score 37.6, E = 3.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F snL rH+r+H fk11940 257 YKCN-ECGKAFIKMSNLIRHQRIH 279 PF00096.16.fs: domain 3 of 18, from 257 to 279: score 35.7, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F snL rH+r+H fk11940 257 YKCN-ECGKAFIKMSNLIRHQRIH 279 PF00096.16.fs: domain 4 of 18, from 285 to 307: score 32.6, E = 7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ksFs+ksnL H ++H fk11940 285 YACK-ECEKSFSQKSNLIDHEKIH 307 PF00096.16.ls: domain 4 of 18, from 285 to 307: score 34.6, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ksFs+ksnL H ++H fk11940 285 YACK-ECEKSFSQKSNLIDHEKIH 307 PF00096.16.fs: domain 5 of 18, from 313 to 335: score 34.5, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k +L +H+++H fk11940 313 YECN-ECGKAFSQKQSLIAHQKVH 335 PF00096.16.ls: domain 5 of 18, from 313 to 335: score 36.5, E = 8.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k +L +H+++H fk11940 313 YECN-ECGKAFSQKQSLIAHQKVH 335 PF00096.16.fs: domain 6 of 18, from 341 to 363: score 29.3, E = 4.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F r ++L H+r+H fk11940 341 YACN-ECGKAFPRIASLALHMRSH 363 PF00096.16.ls: domain 6 of 18, from 341 to 363: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F r ++L H+r+H fk11940 341 YACN-ECGKAFPRIASLALHMRSH 363 PF00096.16.ls: domain 7 of 18, from 369 to 391: score 33.4, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s L H r+H fk11940 369 YKCD-KCGKAFSQFSMLIIHVRIH 391 PF00096.16.fs: domain 7 of 18, from 369 to 391: score 31.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s L H r+H fk11940 369 YKCD-KCGKAFSQFSMLIIHVRIH 391 PF00096.16.fs: domain 8 of 18, from 397 to 419: score 37.8, E = 3.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L+ H+r+H fk11940 397 YECN-ECGKAFSQSSALTVHMRSH 419 PF00096.16.ls: domain 8 of 18, from 397 to 419: score 39.8, E = 9e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L+ H+r+H fk11940 397 YECN-ECGKAFSQSSALTVHMRSH 419 PF00096.16.fs: domain 9 of 18, from 425 to 447: score 28.9, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs+k+n+ +H+++H fk11940 425 YECK-ECRKAFSHKKNFITHQKIH 447 PF00096.16.ls: domain 9 of 18, from 425 to 447: score 30.9, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs+k+n+ +H+++H fk11940 425 YECK-ECRKAFSHKKNFITHQKIH 447 PF00096.16.ls: domain 10 of 18, from 453 to 475: score 38.2, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + snL rH+r+H fk11940 453 YECN-ECGKAFIQMSNLVRHQRIH 475 PF00096.16.fs: domain 10 of 18, from 453 to 475: score 36.2, E = 9.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + snL rH+r+H fk11940 453 YECN-ECGKAFIQMSNLVRHQRIH 475 PF00096.16.ls: domain 11 of 18, from 481 to 503: score 37.9, E = 3.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ksnL +H ++H fk11940 481 YICK-ECGKAFSQKSNLIAHEKIH 503 PF00096.16.fs: domain 11 of 18, from 481 to 503: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ksnL +H ++H fk11940 481 YICK-ECGKAFSQKSNLIAHEKIH 503 PF00096.16.ls: domain 12 of 18, from 509 to 531: score 35.7, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k n+ +H+++H fk11940 509 YECN-ECGKAFSQKQNFITHQKVH 531 PF00096.16.fs: domain 12 of 18, from 509 to 531: score 33.8, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+k n+ +H+++H fk11940 509 YECN-ECGKAFSQKQNFITHQKVH 531 PF00096.16.fs: domain 13 of 18, from 537 to 559: score 29.1, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ ++L+ Hlr+H fk11940 537 YDCN-ECGKAFSQIASLTLHLRSH 559 PF00096.16.ls: domain 13 of 18, from 537 to 559: score 31.1, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fs+ ++L+ Hlr+H fk11940 537 YDCN-ECGKAFSQIASLTLHLRSH 559 PF00096.16.ls: domain 14 of 18, from 565 to 587: score 35.4, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ s L+ H+r+H fk11940 565 YECD-KCGKAFSQCSLLNLHMRSH 587 PF00096.16.fs: domain 14 of 18, from 565 to 587: score 33.4, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ s L+ H+r+H fk11940 565 YECD-KCGKAFSQCSLLNLHMRSH 587 PF00096.16.ls: domain 15 of 18, from 593 to 615: score 36.0, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H+r H fk11940 593 YVCN-ECGKAFSQRTSLIVHMRGH 615 PF00096.16.fs: domain 15 of 18, from 593 to 615: score 34.1, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L H+r H fk11940 593 YVCN-ECGKAFSQRTSLIVHMRGH 615 PF00096.16.ls: domain 16 of 18, from 621 to 643: score 37.5, E = 4.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ H+r H fk11940 621 YECN-KCGKAFSQSSSLTIHIRGH 643 PF00096.16.fs: domain 16 of 18, from 621 to 643: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ H+r H fk11940 621 YECN-KCGKAFSQSSSLTIHIRGH 643 PF00096.16.fs: domain 17 of 18, from 649 to 671: score 31.4, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ s+L+ H+r+H fk11940 649 FDCS-KCGKAFSQISSLTLHMRKH 671 PF00096.16.ls: domain 17 of 18, from 649 to 671: score 33.3, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ s+L+ H+r+H fk11940 649 FDCS-KCGKAFSQISSLTLHMRKH 671 PF00096.16.fs: domain 18 of 18, from 677 to 699: score 29.3, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +Cgk+Fs+ks+L rH+r+H fk11940 677 YHCI-ECGKAFSQKSHLVRHQRIH 699 PF00096.16.ls: domain 18 of 18, from 677 to 699: score 31.2, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +Cgk+Fs+ks+L rH+r+H fk11940 677 YHCI-ECGKAFSQKSHLVRHQRIH 699 //