hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11334371/chunk_1/iprscan-20080811-11334371.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11940 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 528.8 2.3e-154 18 SM00349 147.2 1.7e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 23 83 .. 1 62 [] 147.2 1.7e-39 SM00355 1/18 201 223 .. 1 23 [] 30.5 0.00023 SM00355 2/18 229 251 .. 1 23 [] 25.8 0.0061 SM00355 3/18 257 279 .. 1 23 [] 30.4 0.00025 SM00355 4/18 285 307 .. 1 23 [] 28.7 0.00082 SM00355 5/18 313 335 .. 1 23 [] 31.2 0.00015 SM00355 6/18 341 363 .. 1 23 [] 30.5 0.00024 SM00355 7/18 369 391 .. 1 23 [] 28.8 0.00074 SM00355 8/18 397 419 .. 1 23 [] 32.9 4.3e-05 SM00355 9/18 425 447 .. 1 23 [] 25.8 0.0061 SM00355 10/18 453 475 .. 1 23 [] 30.5 0.00023 SM00355 11/18 481 503 .. 1 23 [] 29.8 0.00038 SM00355 12/18 509 531 .. 1 23 [] 30.4 0.00025 SM00355 13/18 537 559 .. 1 23 [] 27.6 0.0017 SM00355 14/18 565 587 .. 1 23 [] 27.0 0.0026 SM00355 15/18 593 615 .. 1 23 [] 31.8 9.2e-05 SM00355 16/18 621 643 .. 1 23 [] 28.1 0.0012 SM00355 17/18 649 671 .. 1 23 [] 29.3 0.00052 SM00355 18/18 677 699 .. 1 23 [] 29.8 0.00037 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 23 to 83: score 147.2, E = 1.7e-39 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVA+dF+qEEW+ LDpaQr LYR+VMlENY nL +G ++++k fk11940 23 VTFKDVAIDFTQEEWKRLDPAQRKLYRNVMLENYNNLITVG-YPFTK 68 pdliskLEqgeEpwi<-* pd+i+kLEq+eEpw+ fk11940 69 PDVIFKLEQEEEPWV 83 SM00355: domain 1 of 18, from 201 to 223: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ +L+rH+r+H fk11940 201 FKCNH-CGKGFNQTlDLIRHLRIH 223 SM00355: domain 2 of 18, from 229 to 251: score 25.8, E = 0.0061 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C k fs+k+ L++H+++H fk11940 229 YECSN-CRKAFSHKeKLIKHYKIH 251 SM00355: domain 3 of 18, from 257 to 279: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++L+rH+r+H fk11940 257 YKCNE-CGKAFIKMsNLIRHQRIH 279 SM00355: domain 4 of 18, from 285 to 307: score 28.7, E = 0.00082 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C ksfs+k++L+ H ++H fk11940 285 YACKE-CEKSFSQKsNLIDHEKIH 307 SM00355: domain 5 of 18, from 313 to 335: score 31.2, E = 0.00015 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+k++L+ H++vH fk11940 313 YECNE-CGKAFSQKqSLIAHQKVH 335 SM00355: domain 6 of 18, from 341 to 363: score 30.5, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++ +L Hmr+H fk11940 341 YACNE-CGKAFPRIaSLALHMRSH 363 SM00355: domain 7 of 18, from 369 to 391: score 28.8, E = 0.00074 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ + L+ H+r+H fk11940 369 YKCDK-CGKAFSQFsMLIIHVRIH 391 SM00355: domain 8 of 18, from 397 to 419: score 32.9, E = 4.3e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ +aL+ Hmr+H fk11940 397 YECNE-CGKAFSQSsALTVHMRSH 419 SM00355: domain 9 of 18, from 425 to 447: score 25.8, E = 0.0061 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k fs+k++++ H+++H fk11940 425 YECKE-CRKAFSHKkNFITHQKIH 447 SM00355: domain 10 of 18, from 453 to 475: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + ++L+rH+r+H fk11940 453 YECNE-CGKAFIQMsNLVRHQRIH 475 SM00355: domain 11 of 18, from 481 to 503: score 29.8, E = 0.00038 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs+k++L+ H ++H fk11940 481 YICKE-CGKAFSQKsNLIAHEKIH 503 SM00355: domain 12 of 18, from 509 to 531: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+k++++ H++vH fk11940 509 YECNE-CGKAFSQKqNFITHQKVH 531 SM00355: domain 13 of 18, from 537 to 559: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs+ +L+ H+r+H fk11940 537 YDCNE-CGKAFSQIaSLTLHLRSH 559 SM00355: domain 14 of 18, from 565 to 587: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ + L+ Hmr+H fk11940 565 YECDK-CGKAFSQCsLLNLHMRSH 587 SM00355: domain 15 of 18, from 593 to 615: score 31.8, E = 9.2e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs++++L+ Hmr H fk11940 593 YVCNE-CGKAFSQRtSLIVHMRGH 615 SM00355: domain 16 of 18, from 621 to 643: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ ++L+ H+r H fk11940 621 YECNK-CGKAFSQSsSLTIHIRGH 643 SM00355: domain 17 of 18, from 649 to 671: score 29.3, E = 0.00052 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk fs+ ++L+ Hmr+H fk11940 649 FDCSK-CGKAFSQIsSLTLHMRKH 671 SM00355: domain 18 of 18, from 677 to 699: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk fs+k++L+rH+r+H fk11940 677 YHCIE-CGKAFSQKsHLVRHQRIH 699 //