hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11392806/chunk_1/iprscan-20080811-11392806.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk12161 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05110.3.fs AF-4 proto-oncoprotein 1709.0 0 1 PF05110.3.ls AF-4 proto-oncoprotein 1335.0 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05110.3.fs 1/1 9 877 .. 1 1059 [. 1709.0 0 PF05110.3.ls 1/1 9 907 .] 1 1422 [] 1335.0 0 Alignments of top-scoring domains: PF05110.3.fs: domain 1 of 1, from 9 to 877: score 1709.0, E = 0 *->YeeDRNaLRirErERRNQEvqQeedaFpssfpLFgEPYKvAEvTnKG ++eDRN+LR++ErERRNQE+qQ+edaFp+s+pLF+EPYK vT+K+ fk12161 9 NREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYK---VTSKE 52 DeLSsRIQnmLGnYDEMKdFLsdrSnqkhLVGiepkpGkPqtPlnkdeks D+LSsRIQ+mLGnYDEMKdF++drS++k LV+i+ kP++P+++deks fk12161 53 DKLSSRIQSMLGNYDEMKDFIGDRSIPK-LVAIP----KPTVPPSADEKS 97 fvasssfftqvhhGsHQsihttavGpapvgniSrkpksaQpsthsStsls +++ff+q+h+GsHQs+++t+vGpap++++S+k++s+++s+hsS+++s fk12161 98 ---NPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQKRSSGLQSGHSSQRTS 144 apSvvilnsslltqDrkSqsgwsrdsrgksphdaeqrksqsnkmqtvTds a+S++++nss++++Dr+S+++++++sr+k++h++e++ks+s fk12161 145 AGSSSGTNSSGQRHDRESYNNSGSSSRKKGQHGSEHSKSRS--------- 185 aperkLsplisylpspVPPLSpigsvqassprsqeeSkshssgedsfKei S++g++qa+s++++++S+sh+++++s Ke+ fk12161 186 --------------------SSPGKPQAVSSLNSSHSRSHGNDHHS-KEH 214 craKSpkdlevkvqdperPhDgLvaasslkasSsqhsvQtFPPPsLpSKs +r+KSp+d+++++++p+r +++sS+qhs+Q+F PPsL+SKs fk12161 215 QRSKSPRDPDANWDSPSR----------VPFSSGQHSTQSF-PPSLMSKS 253 samQQKPTAYVRPMDGQDQAPdESpeLKlssEFEdyvqqssfgsltdlKP ++m+QKPTAYVRPMDGQ ES+e+KlssE +y++qs+++s+t+lKP fk12161 254 NSMLQKPTAYVRPMDGQ-----ESMEPKLSSE--HYSSQSHGNSMTELKP 296 saasaKAKLtKlkIPsQsvEaslsndvSCVEEILkEMTHSWPPPLTAIHT s +KA+LtKlkIPsQ+++as+s+dvSCV+EILkEMTHSWPPPLTAIHT fk12161 297 S---SKAHLTKLKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAIHT 343 PskaEPSkFPFPtKdSQhvspGtqnQKqyDtsskthsNgqqstSMLEDDL P+k+EPSkFPFPtK+SQ++++Gt++QK+y++s kt sNg+qs+SML+DDL fk12161 344 PCKTEPSKFPFPTKESQQSNFGTGEQKRYNPS-KT-SNGHQSKSMLKDDL 391 KLSssEDDLEPvKtLttqCtAsdeeQaveKtkprsaPpsavlqqPnapqs KLSssED sd+eQ+++Kt+prs+P+s n+++s fk12161 392 KLSSSED--------------SDGEQDCDKTMPRSTPGS------NSEPS 421 lpqsepaasasssGtSssSssSESsSgSDSEsESSSSDSEeeeeNEPpet +++se+a++++++ Sss+s+SESsSgSDSEsESSSSDSE+ NEP+++ fk12161 422 HHNSEGADNSRDD--SSSHSGSESSSGSDSESESSSSDSEA---NEPSQS 466 asPEPEPPsTNKWQLDnWLnKVnphkvppagsnsseppesqqlppPiied asPEPEPP+TNKWQLDnWLnKVnphkv+pa+s++s++p+sq+ fk12161 467 ASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVDSNIPSSQG-------- 508 veskgkveqntsqshpdskepplkSsskekrrPrtaqkapeskalKhKls ++k+++eq+t++s++d+++p+++Ss++++r+++t+qk++es+ fk12161 509 -YKKEGREQGTGNSYTDTSGPKETSSATPGRDSKTIQKGSESG------- 550 PaavavavraaqksPavPCaPAqseptpqrRTvGkKqPkKpeKasaeeep r++qksP Aqs++t+qrRTvGkKqPkK+eKa+aee p fk12161 551 --------RGRQKSP------AQSDSTTQRRTVGKKQPKKAEKAAAEE-P 585 rtslkpEseagtlpygssvqlpkdrpKvktkGrpraairkEpkpsvppat r++lk+Ese+ p++ ++++p++r+K++tkG+++++i+kE+k+s++p+ fk12161 586 RGGLKIESET---PVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPT- 631 PqaavPrPkPPvPtPsEKkKykssskivpKSrefIEPatDsSssdSdtDs +EKkKyks+sk+++KSre+IE tD+SssdSd fk12161 632 ---------------AEKKKYKSTSKSSQKSREIIE--TDTSSSDSD--- 661 DLesepeeeaLqskslpPaiaSsGiqgqrtskskpksgsSlRtsvcrssv +s+slpP s+++pk+++S+Rt+v++ssv fk12161 662 -----------ESESLPP------------SSQTPKYPESNRTPVKPSSV 688 rttndiaqedeekdrlllPlrdteLLSPLrDsdppksLwVKIDLdLLsRI +++++++++r+++P++++eLLSPL+++d++++L+VKIDL+LL+RI fk12161 689 -----EEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKIDLNLLTRI 733 PghLppgkgsrpaKaekKqvsakpkresekkasEkaspkgKRKhKpadde Pg +p+k+++p+K+ekK+v++k++re++k+asEk+s+kgKRKhK++dd+ fk12161 734 PG--KPYKETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDN 781 rdieseKkqrlekdttirLlpktssssSsGPPHkepSstresssssansk r++es+K pkt++++S+G ++pSs+ress++sa+++ fk12161 782 RASESKK-------------PKTEDKNSAG---HKPSSNRESSKQSAAKE 815 KelLPppagekeskspssqsPlrepakkrsrsekdtgssepdksasstks K+lLP+pag+++sk+p++++++r++++++s+s+k++++s++++s+ss++s fk12161 816 KDLLPSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKETSGSSKNS 865 sssskPKkteGK<-* ss+sk+KkteGK fk12161 866 SSTSKQKKTEGK 877 PF05110.3.ls: domain 1 of 1, from 9 to 907: score 1335.0, E = 0 *->YeeDRNaLRirErERRNQEvqQeedaFpssfpLFgEPYKvAEvTnKG ++eDRN+LR++ErERRNQE+qQ+edaFp+s+pLF+EPYK vT+K+ fk12161 9 NREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYK---VTSKE 52 DeLSsRIQnmLGnYDEMKdFLsdrSnqkhLVGiepkpGkPqtPlnkdeks D+LSsRIQ+mLGnYDEMKdF++drS++k LV+i+ kP++P+++deks fk12161 53 DKLSSRIQSMLGNYDEMKDFIGDRSIPK-LVAIP----KPTVPPSADEKS 97 fvasssfftqvhhGsHQsihttavGpapvgniSrkpksaQpsthsStsls +++ff+q+h+GsHQs+++t+vGpap++++S+k++s+++s+hsS+++s fk12161 98 ---NPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQKRSSGLQSGHSSQRTS 144 apSvvilnsslltqDrkSqsgwsrdsrgksphdaeqrksqsnkmqtvTds a+S++++nss++++Dr+S+++++++sr+k++h++e++ks+s fk12161 145 AGSSSGTNSSGQRHDRESYNNSGSSSRKKGQHGSEHSKSRS--------- 185 aperkLsplisylpspVPPLSpigsvqassprsqeeSkshssgedsfKei S++g++qa+s++++++S+sh+++++s Ke+ fk12161 186 --------------------SSPGKPQAVSSLNSSHSRSHGNDHHS-KEH 214 craKSpkdlevkvqdperPhDgLvaasslkasSsqhsvQtFPPPsLpSKs +r+KSp+d+++++++p+r +++sS+qhs+Q+F PPsL+SKs fk12161 215 QRSKSPRDPDANWDSPSR----------VPFSSGQHSTQSF-PPSLMSKS 253 samQQKPTAYVRPMDGQDQAPdESpeLKlssEFEdyvqqssfgsltdlKP ++m+QKPTAYVRPMDGQ ES+e+KlssE +y++qs+++s+t+lKP fk12161 254 NSMLQKPTAYVRPMDGQ-----ESMEPKLSSE--HYSSQSHGNSMTELKP 296 saasaKAKLtKlkIPsQsvEaslsndvSCVEEILkEMTHSWPPPLTAIHT s +KA+LtKlkIPsQ+++as+s+dvSCV+EILkEMTHSWPPPLTAIHT fk12161 297 S---SKAHLTKLKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAIHT 343 PskaEPSkFPFPtKdSQhvspGtqnQKqyDtsskthsNgqqstSMLEDDL P+k+EPSkFPFPtK+SQ++++Gt++QK+y++s kt sNg+qs+SML+DDL fk12161 344 PCKTEPSKFPFPTKESQQSNFGTGEQKRYNPS-KT-SNGHQSKSMLKDDL 391 KLSssEDDLEPvKtLttqCtAsdeeQaveKtkprsaPpsavlqqPnapqs KLSssED sd+eQ+++Kt+prs+P+s n+++s fk12161 392 KLSSSED--------------SDGEQDCDKTMPRSTPGS------NSEPS 421 lpqsepaasasssGtSssSssSESsSgSDSEsESSSSDSEeeeeNEPpet +++se+a++++++ Sss+s+SESsSgSDSEsESSSSDSE+ NEP+++ fk12161 422 HHNSEGADNSRDD--SSSHSGSESSSGSDSESESSSSDSEA---NEPSQS 466 asPEPEPPsTNKWQLDnWLnKVnphkvppagsnsseppesqqlppPiied asPEPEPP+TNKWQLDnWLnKVnphkv+pa+s++s++p+sq+ fk12161 467 ASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVDSNIPSSQG-------- 508 veskgkveqntsqshpdskepplkSsskekrrPrtaqkapeskalKhKls ++k+++eq+t++s++d+++p+++Ss++++r+++t+qk++es+ fk12161 509 -YKKEGREQGTGNSYTDTSGPKETSSATPGRDSKTIQKGSESG------- 550 PaavavavraaqksPavPCaPAqseptpqrRTvGkKqPkKpeKasaeeep r++qksP Aqs++t+qrRTvGkKqPkK+eKa+aee p fk12161 551 --------RGRQKSP------AQSDSTTQRRTVGKKQPKKAEKAAAEE-P 585 rtslkpEseagtlpygssvqlpkdrpKvktkGrpraairkEpkpsvppat r++lk+Ese+ p++ ++++p++r+K++tkG+++++i+kE+k+s++p+ fk12161 586 RGGLKIESET---PVDLASSMPSSRHKAATKGSRKPNIKKESKSSPRPT- 631 PqaavPrPkPPvPtPsEKkKykssskivpKSrefIEPatDsSssdSdtDs +EKkKyks+sk+++KSre+IE tD+SssdSd fk12161 632 ---------------AEKKKYKSTSKSSQKSREIIE--TDTSSSDSD--- 661 DLesepeeeaLqskslpPaiaSsGiqgqrtskskpksgsSlRtsvcrssv +s+slpP s+++pk+++S+Rt+v++ssv fk12161 662 -----------ESESLPP------------SSQTPKYPESNRTPVKPSSV 688 rttndiaqedeekdrlllPlrdteLLSPLrDsdppksLwVKIDLdLLsRI +++++++++r+++P++++eLLSPL+++d++++L+VKIDL+LL+RI fk12161 689 -----EEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKIDLNLLTRI 733 PghLppgkgsrpaKaekKqvsakpkresekkasEkaspkgKRKhKpadde Pg +p+k+++p+K+ekK+v++k++re++k+asEk+s+kgKRKhK++dd+ fk12161 734 PG--KPYKETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDN 781 rdieseKkqrlekdttirLlpktssssSsGPPHkepSstresssssansk r++es+K pkt++++S+G ++pSs+ress++sa+++ fk12161 782 RASESKK-------------PKTEDKNSAG---HKPSSNRESSKQSAAKE 815 KelLPppagekeskspssqsPlrepakkrsrsekdtgssepdksasstks K+lLP+pag+++sk+p++++++r++++++s+s+k++++s++++s+ss++s fk12161 816 KDLLPSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKETSGSSKNS 865 sssskPKkteGKFCAtFKgIsvnegdepKkAasAtitvantAlAtAtvtA ss+sk+KkteGK fk12161 866 SSTSKQKKTEGK-------------------------------------- 877 tAivtatvtasssehagsstdaansnsititltsGLmDssHlemtspfpv t+sss+++ fk12161 878 --------TSSSSKEV---------------------------------- 885 PslsngnakprRpKLkFDdsvqsADyyMqEAKKLKhKADalvdkfGKAvn K K+ fk12161 886 --------------------------------KVKC-------------- 889 YleAvLSFIECGnAmEseplesKSPYYtmYSETVeLIrYaMrLKnfsdpt fk12161 - -------------------------------------------------- - AtaqDKkLAVLClRClSLLYlRMFrLKKDhAmKYSrtLtehFKqNsSkvA fk12161 - -------------------------------------------------- - QAPSPwvagskstGtPSPvSPkpsPgsSVgsqssapssasasgvsgtVSi w+ g+ + + + V+ fk12161 890 -----WGPGA--------------------FENHS---------TCHVTF 905 PqrIhqMAASyVtITSnvLtayelWeqAeaLtreNKEFFadLDtlmGPLt P G fk12161 906 P---------------------------------------------G--- 907 lnSSlvtdLVrYtRQGLhwLRqdAk<-* fk12161 - ------------------------- - //