hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13180589/chunk_1/iprscan-20090618-13180589.nocrc
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Query sequence: fk12438
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.fs Homeobox domain                                 61.9    1.9e-15   5
PF00046.19.ls Homeobox domain                                 28.3    5.1e-06   2
PF00096.16.ls Zinc finger, C2H2 type                          24.6    0.00032   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/2     475   528 ..     1    57 []    16.7  8.3e-05
PF00046.19.ls   2/2     670   724 ..     1    57 []    11.6  0.00028
PF02178.9.ls   1/1     761   773 ..     1    13 []     8.2     0.82

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 2, from 475 to 528: score 16.7, E = 8.3e-05
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r k    t+eQl eL+  + kn+ P  +e+ +L k +gLt+  +k W
     fk12438   475    RAKK---TKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKW 518  

                   FQNRRaKwKk<-*
                   F   R+ ++    
     fk12438   519 FSDTRYNQRN    528  

PF00046.19.ls: domain 2 of 2, from 670 to 724: score 11.6, E = 0.00028
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +      tpeQl  L+ +F +++ Ps+ee  +LAk+ gL  + +  W
     fk12438   670    KICK--KTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSW 714  

                   FQNRRaKwKk<-*
                   F   R+ wK    
     fk12438   715 FGDTRYAWKN    724  

PF02178.9.ls: domain 1 of 1, from 761 to 773: score 8.2, E = 0.82
                   *->kRkRGRPrKaata<-*
                      +R+RGRPr ++     
     fk12438   761    GRPRGRPRGSKRI    773  

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