hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13180589/chunk_1/iprscan-20090618-13180589.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk12438
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00389                                                 197.4    1.3e-54   5
SM00355                                                  36.0      5e-06   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2      77   100 ..     1    23 []    18.1      1.3
SM00355      2/2     109   132 ..     1    23 []    17.9      1.4
SM00389      1/5     291   353 ..     1    63 []    30.0  0.00023
SM00389      2/5     471   533 ..     1    63 []    55.0  9.6e-12
SM00389      3/5     576   637 ..     1    63 []    30.2  0.00022
SM00389      4/5     667   729 ..     1    63 []    55.6  6.5e-12
SM00389      5/5     784   839 ..     1    63 []    26.6  0.00058

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 77 to 100: score 18.1, E = 1.3
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +++++ + ++ H+ + H   
     fk12438    77    YECKY-CTFQTPDLnMFTFHVDsEH    100  

SM00355: domain 2 of 2, from 109 to 132: score 17.9, E = 1.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C++ +++++aL +H  + H   
     fk12438   109    YVCVE-CNFLTKRYdALSEHNLkYH    132  

SM00389: domain 1 of 5, from 291 to 353: score 30.0, E = 0.00023
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  + ++   +    L + ++k pYP+ +e+  L+++ + te+q+k+
     fk12438   291    NSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKI 337  

                   WFQNRRakwkrqekkk<-*
                   WF+ +R k+  ++ ++   
     fk12438   338 WFSAQRLKHGVSWTPE    353  

SM00389: domain 2 of 5, from 471 to 533: score 55.0, E = 9.6e-12
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +   R   t+eQl+eL+ ++ kn++P  +e+++L k +gLt+  +k 
     fk12438   471    SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 517  

                   WFQNRRakwkrqekkk<-*
                   WF+  R+ +++++  +   
     fk12438   518 WFSDTRYNQRNSKSNQ    533  

SM00389: domain 3 of 5, from 576 to 637: score 30.2, E = 0.00022
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +++ +   t eQl++L+++F  +  ++ ee+ +L ++++Lt+r +  
     fk12438   576    PQKFKE-KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 621  

                   WFQNRRakwkrqekkk<-*
                   WF  + +    +e+k+   
     fk12438   622 WFTEKKKSKALKEEKM    637  

SM00389: domain 4 of 5, from 667 to 729: score 55.6, E = 6.5e-12
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  k +  tpeQl+ L+ +F ++++Ps+ee ++LAke gL ++ +  
     fk12438   667    STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 713  

                   WFQNRRakwkrqekkk<-*
                   WF   R+ wk+ + k+   
     fk12438   714 WFGDTRYAWKNGNLKW    729  

SM00389: domain 5 of 5, from 784 to 839: score 26.6, E = 0.00058
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      k ++ t+       +L++++ k++++++++++eL ++ ++  +qV+ 
     fk12438   784    KFKTGTA-------ILKDYYLKHKFLNEQDLDELVNKSHMGYEQVRE 823  

                   WFQNRRakwkrqekkk<-*
                   WF  R +++    +     
     fk12438   824 WFAERQRRSELGIELF    839  

//