hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11522958/chunk_1/iprscan-20080811-11522958.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk12521 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 302.0 1e-87 10 PF00096.16.fs Zinc finger, C2H2 type 281.1 2e-81 10 PF01286.9.fs XPA protein N-terminal 63.9 1.9e-17 9 PF01096.9.fs Transcription factor S-II (TFIIS) 57.4 4.5e-17 9 PF07754.2.fs Domain of unknown function (DUF1610) 38.3 3.1e-09 8 PF07754.2.ls Domain of unknown function (DUF1610) 30.9 4.2e-06 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/10 150 172 .. 1 24 [] 34.6 2.3e-07 PF00096.16.ls 2/10 150 172 .. 1 24 [] 36.5 8.3e-08 PF00096.16.ls 3/10 178 200 .. 1 24 [] 30.2 6.8e-06 PF00096.16.fs 3/10 178 200 .. 1 24 [] 28.2 8.8e-06 PF00096.16.ls 4/10 206 228 .. 1 24 [] 28.7 1.9e-05 PF00096.16.fs 4/10 206 228 .. 1 24 [] 26.7 2e-05 PF00096.16.ls 5/10 234 256 .. 1 24 [] 32.6 1.3e-06 PF00096.16.fs 5/10 234 256 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 6/10 262 284 .. 1 24 [] 27.0 6.1e-05 PF00096.16.fs 6/10 262 284 .. 1 24 [] 25.1 5.4e-05 PF00096.16.fs 7/10 290 312 .. 1 24 [] 34.8 2.1e-07 PF00096.16.ls 7/10 290 312 .. 1 24 [] 36.7 7.3e-08 PF00096.16.fs 8/10 318 340 .. 1 24 [] 32.9 6.1e-07 PF00096.16.ls 8/10 318 340 .. 1 24 [] 34.8 2.7e-07 PF00096.16.fs 9/10 346 368 .. 1 24 [] 33.7 3.8e-07 PF00096.16.ls 9/10 346 368 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 10/10 374 396 .. 1 24 [] 34.5 2.4e-07 PF00096.16.ls 10/10 374 396 .. 1 24 [] 36.5 8.7e-08 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 10, from 150 to 172: score 34.6, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L++H+ tH fk12521 150 YKCE-ECGKAFNRSSHLTTHKITH 172 PF00096.16.ls: domain 2 of 10, from 150 to 172: score 36.5, E = 8.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L++H+ tH fk12521 150 YKCE-ECGKAFNRSSHLTTHKITH 172 PF00096.16.ls: domain 3 of 10, from 178 to 200: score 30.2, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ s++++H+++H fk12521 178 YKCE-ECGKVFKYFSSFTTHKKIH 200 PF00096.16.fs: domain 3 of 10, from 178 to 200: score 28.2, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ s++++H+++H fk12521 178 YKCE-ECGKVFKYFSSFTTHKKIH 200 PF00096.16.ls: domain 4 of 10, from 206 to 228: score 28.7, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F +++L++H+ +H fk12521 206 YICE-ECGKAFMYPYTLTTHKIIH 228 PF00096.16.fs: domain 4 of 10, from 206 to 228: score 26.7, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F +++L++H+ +H fk12521 206 YICE-ECGKAFMYPYTLTTHKIIH 228 PF00096.16.ls: domain 5 of 10, from 234 to 256: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++++L +H+++H fk12521 234 YKCK-ECDKAFNHPATLSSHKKIH 256 PF00096.16.fs: domain 5 of 10, from 234 to 256: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++++L +H+++H fk12521 234 YKCK-ECDKAFNHPATLSSHKKIH 256 PF00096.16.ls: domain 6 of 10, from 262 to 284: score 27.0, E = 6.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s L +H ++H fk12521 262 YTCD-KCGKAFISSSILSKHEKIH 284 PF00096.16.fs: domain 6 of 10, from 262 to 284: score 25.1, E = 5.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s L +H ++H fk12521 262 YTCD-KCGKAFISSSILSKHEKIH 284 PF00096.16.fs: domain 7 of 10, from 290 to 312: score 34.8, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L++H+ +H fk12521 290 YKCE-ECGKAFTRSSHLTMHKIIH 312 PF00096.16.ls: domain 7 of 10, from 290 to 312: score 36.7, E = 7.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L++H+ +H fk12521 290 YKCE-ECGKAFTRSSHLTMHKIIH 312 PF00096.16.fs: domain 8 of 10, from 318 to 340: score 32.9, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ ++ L++H+rtH fk12521 318 YKCE-ECGKAFTWSAGLHKHRRTH 340 PF00096.16.ls: domain 8 of 10, from 318 to 340: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ ++ L++H+rtH fk12521 318 YKCE-ECGKAFTWSAGLHKHRRTH 340 PF00096.16.fs: domain 9 of 10, from 346 to 368: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++++snL+ H+ tH fk12521 346 YKCE-ECGKAYTTSSNLTEHKTTH 368 PF00096.16.ls: domain 9 of 10, from 346 to 368: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++++snL+ H+ tH fk12521 346 YKCE-ECGKAYTTSSNLTEHKTTH 368 PF00096.16.fs: domain 10 of 10, from 374 to 396: score 34.5, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L++H+r+H fk12521 374 YKCK-ECGKAFNWSSDLNKHKRIH 396 PF00096.16.ls: domain 10 of 10, from 374 to 396: score 36.5, E = 8.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L++H+r+H fk12521 374 YKCK-ECGKAFNWSSDLNKHKRIH 396 //