hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-11522958/chunk_1/iprscan-20080811-11522958.nocrc
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Query sequence: fk12521
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 252.1    4.6e-71  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10     94   116 ..     1    23 []     0.5  2.8e+02
SM00355      2/10    150   172 ..     1    23 []    28.2   0.0011
SM00355      3/10    178   200 ..     1    23 []    28.3   0.0011
SM00355      4/10    206   228 ..     1    23 []    24.0     0.02
SM00355      5/10    234   256 ..     1    23 []    28.2   0.0011
SM00355      6/10    262   284 ..     1    23 []    25.0     0.01
SM00355      7/10    290   312 ..     1    23 []    28.2   0.0012
SM00355      8/10    318   340 ..     1    23 []    28.8  0.00073
SM00355      9/10    346   368 ..     1    23 []    28.7  0.00079
SM00355     10/10    374   396 ..     1    23 []    32.0  7.9e-05

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 94 to 116: score 0.5, E = 2.8e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C +   k+f++ ++ krH r+H   
     fk12521    94    FQCGK-YVKVFHQFsNSKRHKRRH    116  

SM00355: domain 2 of 10, from 150 to 172: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L+ H  +H   
     fk12521   150    YKCEE-CGKAFNRSsHLTTHKITH    172  

SM00355: domain 3 of 10, from 178 to 200: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f+  ++++ H ++H   
     fk12521   178    YKCEE-CGKVFKYFsSFTTHKKIH    200  

SM00355: domain 4 of 10, from 206 to 228: score 24.0, E = 0.02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f  +  L+ H  +H   
     fk12521   206    YICEE-CGKAFMYPyTLTTHKIIH    228  

SM00355: domain 5 of 10, from 234 to 256: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k f+++  L  H ++H   
     fk12521   234    YKCKE-CDKAFNHPaTLSSHKKIH    256  

SM00355: domain 6 of 10, from 262 to 284: score 25.0, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f s + L +H ++H   
     fk12521   262    YTCDK-CGKAFISSsILSKHEKIH    284  

SM00355: domain 7 of 10, from 290 to 312: score 28.2, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L+ H  +H   
     fk12521   290    YKCEE-CGKAFTRSsHLTMHKIIH    312  

SM00355: domain 8 of 10, from 318 to 340: score 28.8, E = 0.00073
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++   L +H r+H   
     fk12521   318    YKCEE-CGKAFTWSaGLHKHRRTH    340  

SM00355: domain 9 of 10, from 346 to 368: score 28.7, E = 0.00079
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +++ ++L++H  +H   
     fk12521   346    YKCEE-CGKAYTTSsNLTEHKTTH    368  

SM00355: domain 10 of 10, from 374 to 396: score 32.0, E = 7.9e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L++H r+H   
     fk12521   374    YKCKE-CGKAFNWSsDLNKHKRIH    396  

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