hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-11575625/chunk_1/iprscan-20080811-11575625.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk12595 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01734.12.ls Patatin-like phospholipase 192.7 8.1e-55 1 PF01734.12.fs Patatin-like phospholipase 191.0 2.6e-54 1 PF00023.20.ls Ankyrin repeat 157.7 2.7e-44 6 PF00023.20.fs Ankyrin repeat 145.8 1e-40 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/6 168 201 .. 1 33 [] 21.5 5.3e-05 PF00023.20.ls 1/6 168 201 .. 1 33 [] 23.5 0.00071 PF00023.20.ls 2/6 202 235 .. 1 33 [] 13.9 0.28 PF00023.20.fs 2/6 202 235 .. 1 33 [] 11.9 0.024 PF00023.20.ls 3/6 236 268 .. 1 33 [] 28.1 2.9e-05 PF00023.20.fs 3/6 236 268 .. 1 33 [] 26.1 2.7e-06 PF00023.20.ls 4/6 303 332 .. 1 33 [] 18.6 0.021 PF00023.20.fs 4/6 303 332 .. 1 33 [] 16.7 0.0012 PF00023.20.ls 5/6 333 365 .. 1 33 [] 34.7 2.9e-07 PF00023.20.fs 5/6 333 365 .. 1 33 [] 32.7 3.8e-08 PF00023.20.fs 6/6 366 398 .. 1 33 [] 36.9 2.6e-09 PF00023.20.ls 6/6 366 398 .. 1 33 [] 38.9 1.6e-08 PF01734.12.fs 1/1 498 682 .. 1 262 [] 191.0 2.6e-54 PF01734.12.ls 1/1 498 682 .. 1 262 [] 192.7 8.1e-55 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 6, from 168 to 201: score 21.5, E = 5.3e-05 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+TPLHlA+++g+ e++ +L++ + +++d fk12595 168 EGCTPLHLACRKGDGEILVELVQyCHTQMDVTDY 201 PF00023.20.ls: domain 1 of 6, from 168 to 201: score 23.5, E = 0.00071 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+TPLHlA+++g+ e++ +L++ + +++d fk12595 168 EGCTPLHLACRKGDGEILVELVQyCHTQMDVTDY 201 PF00023.20.ls: domain 2 of 6, from 202 to 235: score 13.9, E = 0.28 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+T H+A++ +n +v++lL ++ A ln +++ fk12595 202 KGETVFHYAVQGDNSQVLQLLGRnAVAGLNQVNN 235 PF00023.20.fs: domain 2 of 6, from 202 to 235: score 11.9, E = 0.024 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+T H+A++ +n +v++lL ++ A ln +++ fk12595 202 KGETVFHYAVQGDNSQVLQLLGRnAVAGLNQVNN 235 PF00023.20.ls: domain 3 of 6, from 236 to 268: score 28.1, E = 2.9e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlA++ g e+v+ Ll + A n+ fk12595 236 QGLTPLHLACQLGKQEMVRVLLLCNARCNIMGP 268 PF00023.20.fs: domain 3 of 6, from 236 to 268: score 26.1, E = 2.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPLHlA++ g e+v+ Ll + A n+ fk12595 236 QGLTPLHLACQLGKQEMVRVLLLCNARCNIMGP 268 PF00023.20.ls: domain 4 of 6, from 303 to 332: score 18.6, E = 0.021 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G +PLH+A n+e++++Ll++G+++n + fk12595 303 YGASPLHWA---KNAEMARMLLKRGCNVNSTSS 332 PF00023.20.fs: domain 4 of 6, from 303 to 332: score 16.7, E = 0.0012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G +PLH+A n+e++++Ll++G+++n + fk12595 303 YGASPLHWA---KNAEMARMLLKRGCNVNSTSS 332 PF00023.20.ls: domain 5 of 6, from 333 to 365: score 34.7, E = 2.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+A++r++ +++ Ll +GA+ +a+ fk12595 333 AGNTALHVAVMRNRFDCAIVLLTHGANADARGE 365 PF00023.20.fs: domain 5 of 6, from 333 to 365: score 32.7, E = 3.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+A++r++ +++ Ll +GA+ +a+ fk12595 333 AGNTALHVAVMRNRFDCAIVLLTHGANADARGE 365 PF00023.20.fs: domain 6 of 6, from 366 to 398: score 36.9, E = 2.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLHlA +++n+e++k L+ GA+++ +d fk12595 366 HGNTPLHLAMSKDNVEMIKALIVFGAEVDTPND 398 PF00023.20.ls: domain 6 of 6, from 366 to 398: score 38.9, E = 1.6e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLHlA +++n+e++k L+ GA+++ +d fk12595 366 HGNTPLHLAMSKDNVEMIKALIVFGAEVDTPND 398 PF01734.12.fs: domain 1 of 1, from 498 to 682: score 191.0, E = 2.6e-54 *->LvLdGGGarGiaWhiGvLkaLeeagielDGpdarlldyfDviaGTSa L+LdGGG++G++ i+ L+a+e+a+ ++ + d fD++aGTS+ fk12595 498 LCLDGGGVKGLI-IIQLLIAIEKAS------GVATKDLFDWVAGTST 537 GaivaallaagldparplFaeeleefylevkpriFldssgksptelakil G+i+a+++ ++ ++ + ++y+++k+++F++ fk12595 538 GGILALAILHS-KS-----MAYMRGMYFRMKDEVFRG------------- 568 rlaltakllklrdltrpslglvlaglydgdrlekllkdllregrfgdltl +++y + +le++lk+++ g++t fk12595 569 -----------------------SRPYESGPLEEFLKREF-----GEHTK 590 edlpkvrrresltfddfllyidrtgkplvipatmvtavdlstge.pvi.f + + + p++m+t++ ++ + +++ f fk12595 591 MTDVR---------------------K---PKVMLTGTLSDRQPaELHlF 616 rnyeal...............nnstpsdgklwdAvrASsaaPgyFppvel rny+a+++ ++++ +++ + +++ +psd+++w+A+r+S aaP+yF+p fk12595 617 RNYDAPetvreprfnqnvnlrPPAQPSDQLVWRAARSSGAAPTYFRP--- 663 ktedkglepinidgfllvDGGvvaNnPvllar<-* +++++DGG++aNnP+l+a+ fk12595 664 -------------NGRFLDGGLLANNPTLDAM 682 PF01734.12.ls: domain 1 of 1, from 498 to 682: score 192.7, E = 8.1e-55 *->LvLdGGGarGiaWhiGvLkaLeeagielDGpdarlldyfDviaGTSa L+LdGGG++G++ i+ L+a+e+a+ ++ + d fD++aGTS+ fk12595 498 LCLDGGGVKGLI-IIQLLIAIEKAS------GVATKDLFDWVAGTST 537 GaivaallaagldparplFaeeleefylevkpriFldssgksptelakil G+i+a+++ ++ ++ + ++y+++k+++F++ fk12595 538 GGILALAILHS-KS-----MAYMRGMYFRMKDEVFRG------------- 568 rlaltakllklrdltrpslglvlaglydgdrlekllkdllregrfgdltl +++y + +le++lk+++ g++t fk12595 569 -----------------------SRPYESGPLEEFLKREF-----GEHTK 590 edlpkvrrresltfddfllyidrtgkplvipatmvtavdlstge.pvi.f + + + p++m+t++ ++ + +++ f fk12595 591 MTDVR---------------------K---PKVMLTGTLSDRQPaELHlF 616 rnyeal...............nnstpsdgklwdAvrASsaaPgyFppvel rny+a+++ ++++ +++ + +++ +psd+++w+A+r+S aaP+yF+p fk12595 617 RNYDAPetvreprfnqnvnlrPPAQPSDQLVWRAARSSGAAPTYFRP--- 663 ktedkglepinidgfllvDGGvvaNnPvllar<-* +++++DGG++aNnP+l+a+ fk12595 664 -------------NGRFLDGGLLANNPTLDAM 682 //