hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-11575625/chunk_1/iprscan-20080811-11575625.nocrc
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Query sequence: fk12595
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 142.4    4.8e-38   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/6     168   198 ..     1    30 []    23.5    0.029
SM00248    2/6     202   232 ..     1    30 []    11.8    1e+02
SM00248    3/6     236   265 ..     1    30 []    26.5   0.0037
SM00248    4/6     303   329 ..     1    30 []    18.4        1
SM00248    5/6     333   362 ..     1    30 []    29.6  0.00043
SM00248    6/6     366   395 ..     1    30 []    32.7  5.2e-05

Alignments of top-scoring domains:
SM00248: domain 1 of 6, from 168 to 198: score 23.5, E = 0.029
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +G+TpLHlA+++g+ e++ +L+++  + +++   
     fk12595   168    EGCTPLHLACRKGDGEILVELVQYCHtQMDV    198  

SM00248: domain 2 of 6, from 202 to 232: score 11.8, E = 1e+02
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       G T +H+A++ +n  v++lL ++ +  +n    
     fk12595   202    KGETVFHYAVQGDNSQVLQLLGRNAVaGLNQ    232  

SM00248: domain 3 of 6, from 236 to 265: score 26.5, E = 0.0037
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G TpLHlA++ g  e+v+ Ll  +a +n+   
     fk12595   236    QGLTPLHLACQLGKQEMVRVLLLCNARCNI    265  

SM00248: domain 4 of 6, from 303 to 329: score 18.4, E = 1
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G +pLH+A    n e++++Ll++g ++n    
     fk12595   303    YGASPLHWAK---NAEMARMLLKRGCNVNS    329  

SM00248: domain 5 of 6, from 333 to 362: score 29.6, E = 0.00043
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH+A+++++ +++  Ll +ga+ +a   
     fk12595   333    AGNTALHVAVMRNRFDCAIVLLTHGANADA    362  

SM00248: domain 6 of 6, from 366 to 395: score 32.7, E = 5.2e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpLHlA++++n+e++k+L+  ga+++    
     fk12595   366    HGNTPLHLAMSKDNVEMIKALIVFGAEVDT    395  

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