# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk12694.fasta.nr -Q fk12694.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk12694, 75 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842937 sequences Expectation_n fit: rho(ln(x))= 4.9109+/-0.000176; mu= 2.8488+/- 0.010 mean_var=53.2644+/-10.482, 0's: 58 Z-trim: 59 B-trim: 29 in 1/63 Lambda= 0.175734 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088682|dbj|BAD92788.1| spectrin, beta, non-er ( 75) 492 131.9 7.4e-30 gi|119620542|gb|EAX00137.1| spectrin, beta, non-er ( 62) 408 110.6 1.6e-23 gi|62089082|dbj|BAD92985.1| spectrin, beta, non-er (2377) 414 112.8 1.3e-22 gi|62204786|gb|AAH92544.1| Spnb2 protein [Mus musc ( 98) 334 91.9 1.1e-17 gi|62702178|gb|AAX93104.1| unknown [Homo sapiens] ( 49) 325 89.5 2.9e-17 gi|34304492|gb|AAQ63200.1| beta-spectrin [Canis fa ( 149) 330 91.0 3.1e-17 gi|92097565|gb|AAI14849.1| SPTBN1 protein [Bos tau ( 305) 330 91.1 5.8e-17 gi|73969630|ref|XP_865214.1| PREDICTED: similar to (2016) 330 91.5 2.9e-16 gi|123211172|emb|CAM16973.1| spectrin beta 2 [Mus (2092) 330 91.5 3e-16 gi|119620549|gb|EAX00144.1| spectrin, beta, non-er (2150) 330 91.5 3.1e-16 gi|73969628|ref|XP_865194.1| PREDICTED: similar to (2168) 330 91.5 3.1e-16 gi|114577401|ref|XP_001153722.1| PREDICTED: spectr (2168) 330 91.5 3.1e-16 gi|114577399|ref|XP_001153407.1| PREDICTED: simila (2278) 330 91.5 3.3e-16 gi|109102943|ref|XP_001114652.1| PREDICTED: spectr (2278) 330 91.5 3.3e-16 gi|448251|prf||1916380A beta spectrin (beta fodrin (2342) 330 91.5 3.3e-16 gi|33303722|gb|AAQ02380.1| non-erythroid spectrin (2358) 330 91.5 3.4e-16 gi|118087525|ref|XP_419291.2| PREDICTED: similar t (2362) 330 91.5 3.4e-16 gi|149044856|gb|EDL98042.1| spectrin beta 2, isofo (2363) 330 91.5 3.4e-16 gi|97537229|sp|Q62261|SPTB2_MOUSE Spectrin beta ch (2363) 330 91.5 3.4e-16 gi|409226|gb|AAC42040.1| brain beta spectrin [Mus (2363) 330 91.5 3.4e-16 gi|119903493|ref|XP_588094.3| PREDICTED: spectrin, (2363) 330 91.5 3.4e-16 gi|338443|gb|AAA60580.1| beta-spectrin (2364) 330 91.5 3.4e-16 gi|109102941|ref|XP_001114804.1| PREDICTED: spectr (2364) 330 91.5 3.4e-16 gi|116242799|sp|Q01082|SPTB2_HUMAN Spectrin beta c (2364) 330 91.5 3.4e-16 gi|149727574|ref|XP_001497079.1| PREDICTED: spectr (2364) 330 91.5 3.4e-16 gi|73969626|ref|XP_531827.2| PREDICTED: similar to (2364) 330 91.5 3.4e-16 gi|47209541|emb|CAF96655.1| unnamed protein produc ( 373) 264 74.4 7.5e-12 gi|54038766|gb|AAH84634.1| LOC398511 protein [Xeno ( 794) 266 75.1 1e-11 gi|28277312|gb|AAH46267.1| LOC398511 protein [Xeno (1060) 266 75.2 1.3e-11 gi|148725238|emb|CAM14133.2| novel protein similar (2391) 269 76.1 1.5e-11 gi|47209542|emb|CAF96656.1| unnamed protein produc (2275) 264 74.8 3.6e-11 gi|149607640|ref|XP_001520343.1| PREDICTED: simila ( 551) 249 70.7 1.5e-10 gi|115313501|gb|AAI24114.1| LOC558044 protein [Dan ( 465) 244 69.4 3e-10 gi|141796971|gb|AAI39789.1| SPTBN2 protein [Homo s ( 934) 245 69.8 4.6e-10 gi|47227240|emb|CAG00602.1| unnamed protein produc (2413) 249 71.0 5.2e-10 gi|63101968|gb|AAH95643.1| LOC553451 protein [Dani ( 977) 244 69.6 5.8e-10 gi|119594965|gb|EAW74559.1| spectrin, beta, non-er (1270) 245 69.9 6.1e-10 gi|114638759|ref|XP_001172427.1| PREDICTED: spectr (2299) 245 70.0 1e-09 gi|119594966|gb|EAW74560.1| spectrin, beta, non-er (2365) 245 70.0 1e-09 gi|114638757|ref|XP_001172460.1| PREDICTED: spectr (2365) 245 70.0 1e-09 gi|73982903|ref|XP_865285.1| PREDICTED: similar to (2380) 245 70.0 1e-09 gi|194218508|ref|XP_001917451.1| PREDICTED: simila (2382) 245 70.0 1e-09 gi|149061992|gb|EDM12415.1| spectrin beta 3 [Rattu (2388) 245 70.0 1e-09 gi|74188639|dbj|BAE28063.1| unnamed protein produc (2388) 245 70.0 1e-09 gi|3452553|dbj|BAA32473.1| brain beta 3 spectrin [ (2388) 245 70.0 1e-09 gi|51259658|gb|AAH79860.1| Spectrin beta 3 [Mus mu (2388) 245 70.0 1e-09 gi|17367415|sp|Q9QWN8.2|SPTN2_RAT Spectrin beta ch (2388) 245 70.0 1e-09 gi|11066461|gb|AAG28596.1|AF225960_1 spectrin-like (2388) 245 70.0 1e-09 gi|17367904|sp|O15020|SPTN2_HUMAN Spectrin beta ch (2390) 245 70.0 1e-09 gi|114638753|ref|XP_508579.2| PREDICTED: spectrin, (2390) 245 70.0 1e-09 >>gi|62088682|dbj|BAD92788.1| spectrin, beta, non-erythr (75 aa) initn: 492 init1: 492 opt: 492 Z-score: 691.2 bits: 131.9 E(): 7.4e-30 Smith-Waterman score: 492; 100.000% identity (100.000% similar) in 75 aa overlap (1-75:1-75) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 50 60 70 fk1269 LAGESFTPVTEAQDA ::::::::::::::: gi|620 LAGESFTPVTEAQDA 70 >>gi|119620542|gb|EAX00137.1| spectrin, beta, non-erythr (62 aa) initn: 408 init1: 408 opt: 408 Z-score: 577.4 bits: 110.6 E(): 1.6e-23 Smith-Waterman score: 408; 100.000% identity (100.000% similar) in 62 aa overlap (14-75:1-62) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA ::::::::::::::: gi|119 LAGESFTPVTEAQDA 50 60 >>gi|62089082|dbj|BAD92985.1| spectrin, beta, non-erythr (2377 aa) initn: 414 init1: 414 opt: 414 Z-score: 561.0 bits: 112.8 E(): 1.3e-22 Smith-Waterman score: 414; 98.438% identity (98.438% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 50 60 70 fk1269 LAGESFTPVTEAQDA :: : gi|620 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 70 80 90 100 110 120 >>gi|62204786|gb|AAH92544.1| Spnb2 protein [Mus musculus (98 aa) initn: 334 init1: 334 opt: 334 Z-score: 472.9 bits: 91.9 E(): 1.1e-17 Smith-Waterman score: 334; 98.039% identity (100.000% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|622 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :::. gi|622 LAGKCPDVVCPTCHQMFCSPLNINHFSFKLSCLKLTSPCFNISYESLLTLL 50 60 70 80 90 >>gi|62702178|gb|AAX93104.1| unknown [Homo sapiens] (49 aa) initn: 325 init1: 325 opt: 325 Z-score: 465.2 bits: 89.5 E(): 2.9e-17 Smith-Waterman score: 325; 100.000% identity (100.000% similar) in 49 aa overlap (14-62:1-49) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|627 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: gi|627 LA >>gi|34304492|gb|AAQ63200.1| beta-spectrin [Canis famili (149 aa) initn: 330 init1: 330 opt: 330 Z-score: 464.6 bits: 91.0 E(): 3.1e-17 Smith-Waterman score: 330; 98.039% identity (98.039% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|343 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: : gi|343 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 50 60 70 80 90 100 >>gi|92097565|gb|AAI14849.1| SPTBN1 protein [Bos taurus] (305 aa) initn: 330 init1: 330 opt: 330 Z-score: 459.8 bits: 91.1 E(): 5.8e-17 Smith-Waterman score: 330; 98.039% identity (98.039% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|920 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: : gi|920 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 50 60 70 80 90 100 >>gi|73969630|ref|XP_865214.1| PREDICTED: similar to Spe (2016 aa) initn: 330 init1: 330 opt: 330 Z-score: 447.1 bits: 91.5 E(): 2.9e-16 Smith-Waterman score: 330; 98.039% identity (98.039% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: : gi|739 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 50 60 70 80 90 100 >>gi|123211172|emb|CAM16973.1| spectrin beta 2 [Mus musc (2092 aa) initn: 330 init1: 330 opt: 330 Z-score: 446.8 bits: 91.5 E(): 3e-16 Smith-Waterman score: 330; 98.039% identity (98.039% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: : gi|123 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 50 60 70 80 90 100 >>gi|119620549|gb|EAX00144.1| spectrin, beta, non-erythr (2150 aa) initn: 330 init1: 330 opt: 330 Z-score: 446.6 bits: 91.5 E(): 3.1e-16 Smith-Waterman score: 330; 98.039% identity (98.039% similar) in 51 aa overlap (14-64:1-51) 10 20 30 40 50 60 fk1269 EGADVEEQLRQFKMTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKA 10 20 30 40 70 fk1269 LAGESFTPVTEAQDA :: : gi|119 LADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGR 50 60 70 80 90 100 75 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 12:01:38 2008 done: Mon Aug 11 12:05:01 2008 Total Scan time: 433.990 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]