hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12215792/chunk_1/iprscan-20080811-12215792.nocrc
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Query sequence: fk12906
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08166.2.ls NUC202 domain                                  338.5      1e-98   2
PF08166.2.fs NUC202 domain                                  334.7    1.5e-97   2
PF08167.2.fs NUC201 domain                                  211.7    3.3e-63   1
PF08167.2.ls NUC201 domain                                  213.6    4.2e-61   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08167.2.ls   1/1      81   162 ..     1    86 []   213.6  4.2e-61
PF08167.2.fs   1/1      81   162 ..     1    86 []   211.7  3.3e-63
PF08166.2.fs   1/2     425   491 ..     1    77 []   156.7  5.4e-44
PF08166.2.ls   1/2     425   491 ..     1    77 []   158.6  1.5e-44
PF08166.2.ls   2/2     571   644 ..     1    77 []   179.9  5.8e-51
PF08166.2.fs   2/2     571   644 ..     1    77 []   177.9  2.2e-50

Alignments of top-scoring domains:
PF08167.2.ls: domain 1 of 1, from 81 to 162: score 213.6, E = 4.2e-61
                   *->vGGAqnLsALGALvsLsnArLssiKtRFEGLCLLsLLvGEsPtELFq
                      vGGAqnLsALGALvsLsnArLssiKtRFEGLCLLsLLvGEsPtELFq
     fk12906    81    VGGAQNLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQ 127  

                   qHCvsWLRsiqqvLqvllnfqesPetmElavavlrdLlR<-*
                   qHCvsWLRsiqqvLq+    q++P+tmElavavlrdLlR   
     fk12906   128 QHCVSWLRSIQQVLQT----QDPPATMELAVAVLRDLLR    162  

PF08167.2.fs: domain 1 of 1, from 81 to 162: score 211.7, E = 3.3e-63
                   *->vGGAqnLsALGALvsLsnArLssiKtRFEGLCLLsLLvGEsPtELFq
                      vGGAqnLsALGALvsLsnArLssiKtRFEGLCLLsLLvGEsPtELFq
     fk12906    81    VGGAQNLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQ 127  

                   qHCvsWLRsiqqvLqvllnfqesPetmElavavlrdLlR<-*
                   qHCvsWLRsiqqvLq+    q++P+tmElavavlrdLlR   
     fk12906   128 QHCVSWLRSIQQVLQT----QDPPATMELAVAVLRDLLR    162  

PF08166.2.fs: domain 1 of 2, from 425 to 491: score 156.7, E = 5.4e-44
                   *->PYssvRtkvelillLlvlllaaSPRCPPPLAgaLQafalGeallsll
                      PYs+vRtkv++il+L+v++++aS       Ag+LQ++a+Geall++l
     fk12906   425    PYSTVRTKVYAILELWVQVCGAS-------AGMLQGGASGEALLTHL 464  

                   lSdisseALvdalkLrsPRvsPDGsLQPtG<-*
                   lSdis++A  dalkLrsPR+sPDGsLQ tG   
     fk12906   465 LSDISPPA--DALKLRSPRGSPDGSLQ-TG    491  

PF08166.2.ls: domain 1 of 2, from 425 to 491: score 158.6, E = 1.5e-44
                   *->PYssvRtkvelillLlvlllaaSPRCPPPLAgaLQafalGeallsll
                      PYs+vRtkv++il+L+v++++aS       Ag+LQ++a+Geall++l
     fk12906   425    PYSTVRTKVYAILELWVQVCGAS-------AGMLQGGASGEALLTHL 464  

                   lSdisseALvdalkLrsPRvsPDGsLQPtG<-*
                   lSdis++A  dalkLrsPR+sPDGsLQ tG   
     fk12906   465 LSDISPPA--DALKLRSPRGSPDGSLQ-TG    491  

PF08166.2.ls: domain 2 of 2, from 571 to 644: score 179.9, E = 5.8e-51
                   *->PYssvRtkvelillLlvlllaaSPRCPPPLAgaLQafalGeallsll
                      PY+s+R+++el++lLl+llla+SPRCPPPLA+aLQaf+lG++++sl+
     fk12906   571    PYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLE 617  

                   lSdisseALvdalkLrsPRvsPDGsLQPtG<-*
                   +S+++seALv++++L++PRv+P   LQP+G   
     fk12906   618 VSSFCSEALVTCAALTHPRVPP---LQPMG    644  

PF08166.2.fs: domain 2 of 2, from 571 to 644: score 177.9, E = 2.2e-50
                   *->PYssvRtkvelillLlvlllaaSPRCPPPLAgaLQafalGeallsll
                      PY+s+R+++el++lLl+llla+SPRCPPPLA+aLQaf+lG++++sl+
     fk12906   571    PYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLE 617  

                   lSdisseALvdalkLrsPRvsPDGsLQPtG<-*
                   +S+++seALv++++L++PRv+P   LQP+G   
     fk12906   618 VSSFCSEALVTCAALTHPRVPP---LQPMG    644  

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