hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-12273158/chunk_1/iprscan-20080811-12273158.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk12931 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 551.5 4.5e-167 1 PF08441.2.ls Integrin alpha 553.2 2.4e-163 1 PF01839.13.fs FG-GAP repeat 27.4 4.3e-07 2 PF01839.13.ls FG-GAP repeat 26.8 6.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01839.13.fs 2/2 46 77 .. 1 36 [] 25.1 2e-06 PF01839.13.ls 1/1 46 77 .. 1 36 [] 26.8 6.9e-05 PF08441.2.fs 1/1 79 510 .. 1 483 [] 551.5 4.5e-167 PF08441.2.ls 1/1 79 510 .. 1 483 [] 553.2 2.4e-163 Alignments of top-scoring domains: PF01839.13.fs: domain 2 of 2, from 46 to 77: score 25.1, E = 2e-06 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.d.gsvyll<-* fg s++++ D++ +G+pDl+v g+ + ++v ++ fk12931 46 FGFSLRGAvDIDDNGYPDLIV-------GAyGaNQVAVY 77 PF01839.13.ls: domain 1 of 1, from 46 to 77: score 26.8, E = 6.9e-05 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.d.gsvyll<-* fg s++++ D++ +G+pDl+v g+ + ++v ++ fk12931 46 FGFSLRGAvDIDDNGYPDLIV-------GAyGaNQVAVY 77 PF08441.2.fs: domain 1 of 1, from 79 to 510: score 551.5, E = 4.5e-167 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg ++PVv+ s++l + ++++np++k+C+lp+++tpvsCfn+++C +tg fk12931 79 AQPVVKASVQLLV-QDSLNPAVKSCVLPQTKTPVSCFNIQMCVGATG 124 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg +++ pq+++ln +LqLD+ +k r+ +R+l+l +++++ +t nl lg fk12931 125 HNI----PQKLSLNAELQLDR--QKPRQGRRVLLL-GSQQAGTTLNLDLG 167 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg +s C+t+ ++LrdE+++rDklsPIv++ln+sL +++ g fk12931 168 GKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSL---------PPTEAG 208 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv + P++ ++ t++++q+++ ++CGeD++Cv+ LqL++s + ++L+ fk12931 209 M-APAVVLHGDTHVQEQTRIVLDCGEDDVCVPQLQLTASVT----GSPLL 253 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesekp vG+++ L+L+ + N+ GE+AYea+L+v++P+g+++++ + n e++++ fk12931 254 VGADNVLELQMDAANE-GEGAYEAELAVHLPQGAHYMRALS--NVEGFER 300 lsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslefd l+C+++ken+tr+v+C+lGnP mk+++q+ + ++ +v++l+++g+s++f+ fk12931 301 LICNQKKENETRVVLCELGNP-MKKNAQIGIAMLVSVGNLEEAGESVSFQ 349 lqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnwe lq++S+N++ n+n+ v l +pV++ea+++++G+s+p +++++++ e fk12931 350 LQIRSKNSQ---NPNSKIVLLDVPVRAEAQVELRGNSFPASLVVAAE--E 394 gesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasds ge + +s++++G p+vehtYe++N+Gp tv++++l+i++P + s fk12931 395 GEREQNSLDSWG---PKVEHTYELHNNGPG-TVNGLHLSIHLPGQ----S 436 ngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttprleal + + llY+l++q +g+++C pq++ +npl++d++ + ++p+++++ fk12931 437 QPS-DLLYILDIQP----QGGLQCFPQPP-VNPLKVDWGLPIPSPSPIHP 480 lrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++r+r++i+ e++q++++ d l++ + fk12931 481 AHHKRDRRQIFLPEPEQPSRLQDP------VLVVSR 510 PF08441.2.ls: domain 1 of 1, from 79 to 510: score 553.2, E = 2.4e-163 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg ++PVv+ s++l + ++++np++k+C+lp+++tpvsCfn+++C +tg fk12931 79 AQPVVKASVQLLV-QDSLNPAVKSCVLPQTKTPVSCFNIQMCVGATG 124 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg +++ pq+++ln +LqLD+ +k r+ +R+l+l +++++ +t nl lg fk12931 125 HNI----PQKLSLNAELQLDR--QKPRQGRRVLLL-GSQQAGTTLNLDLG 167 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg +s C+t+ ++LrdE+++rDklsPIv++ln+sL +++ g fk12931 168 GKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSL---------PPTEAG 208 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv + P++ ++ t++++q+++ ++CGeD++Cv+ LqL++s + ++L+ fk12931 209 M-APAVVLHGDTHVQEQTRIVLDCGEDDVCVPQLQLTASVT----GSPLL 253 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnpesekp vG+++ L+L+ + N+ GE+AYea+L+v++P+g+++++ + n e++++ fk12931 254 VGADNVLELQMDAANE-GEGAYEAELAVHLPQGAHYMRALS--NVEGFER 300 lsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgdslefd l+C+++ken+tr+v+C+lGnP mk+++q+ + ++ +v++l+++g+s++f+ fk12931 301 LICNQKKENETRVVLCELGNP-MKKNAQIGIAMLVSVGNLEEAGESVSFQ 349 lqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffngsnwe lq++S+N++ n+n+ v l +pV++ea+++++G+s+p +++++++ e fk12931 350 LQIRSKNSQ---NPNSKIVLLDVPVRAEAQVELRGNSFPASLVVAAE--E 394 gesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyelasds ge + +s++++G p+vehtYe++N+Gp tv++++l+i++P + s fk12931 395 GEREQNSLDSWG---PKVEHTYELHNNGPG-TVNGLHLSIHLPGQ----S 436 ngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttprleal + + llY+l++q +g+++C pq++ +npl++d++ + ++p+++++ fk12931 437 QPS-DLLYILDIQP----QGGLQCFPQPP-VNPLKVDWGLPIPSPSPIHP 480 lrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++r+r++i+ e++q++++ d l++ + fk12931 481 AHHKRDRRQIFLPEPEQPSRLQDP------VLVVSR 510 //