hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-12340207/chunk_1/iprscan-20080811-12340207.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk13033 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00631.12.fs GGL domain 98.2 1.8e-29 1 PF00631.12.ls GGL domain 100.2 5.8e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00631.12.fs 1/1 9 63 .. 1 55 [] 98.2 1.8e-29 PF00631.12.ls 1/1 9 63 .. 1 55 [] 100.2 5.8e-27 Alignments of top-scoring domains: PF00631.12.fs: domain 1 of 1, from 9 to 63: score 98.2, E = 1.8e-29 *->vdqlrkeveqLrkelsreRiKvSkaaeellaYceqraenDPLltGpp +++l+++veqL++e++ eRiKvS+aa+el++Yc+q+a++D+Ll+G+p fk13033 9 ASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVP 55 pskNPFie<-* + +NPF+e fk13033 56 AGSNPFRE 63 PF00631.12.ls: domain 1 of 1, from 9 to 63: score 100.2, E = 5.8e-27 *->vdqlrkeveqLrkelsreRiKvSkaaeellaYceqraenDPLltGpp +++l+++veqL++e++ eRiKvS+aa+el++Yc+q+a++D+Ll+G+p fk13033 9 ASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVP 55 pskNPFie<-* + +NPF+e fk13033 56 AGSNPFRE 63 //