# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk13065.fasta.nr -Q fk13065.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 fk13065, 106 aa
 vs /cdna2/lib/nr/nr library

2362217958 residues in 6843189 sequences
 statistics sampled from 60000 to 6842983 sequences
  Expectation_n fit: rho(ln(x))= 4.6160+/-0.000181; mu= 8.1437+/- 0.010
 mean_var=59.8433+/-11.849, 0's: 57 Z-trim: 57  B-trim: 2922 in 1/66
 Lambda= 0.165793

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(6843189)
gi|62087464|dbj|BAD92179.1| Elastin precursor vari ( 106)  727 181.1 2.4e-44


>>gi|62087464|dbj|BAD92179.1| Elastin precursor variant   (106 aa)
 initn: 727 init1: 727 opt: 727  Z-score: 951.4  bits: 181.1 E(): 2.4e-44
Smith-Waterman score: 727;  100.000% identity (100.000% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
fk1306 RRRPRGPESSCSCCPSSTPLGLEGSLGPFLVEFLEESFIQRWGLEANLLSQFPEGLRVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|620 RRRPRGPESSCSCCPSSTPLGLEGSLGPFLVEFLEESFIQRWGLEANLLSQFPEGLRVLA
               10        20        30        40        50        60

               70        80        90       100      
fk1306 LGQGSAPSPQLPFRGLWCLVEWLTLLQPIKLLRLALGLVVSQELVA
       ::::::::::::::::::::::::::::::::::::::::::::::
gi|620 LGQGSAPSPQLPFRGLWCLVEWLTLLQPIKLLRLALGLVVSQELVA
               70        80        90       100      




106 residues in 1 query   sequences
2362217958 residues in 6843189 library sequences
 Tcomplib [34.26] (8 proc)
 start: Mon Aug 11 12:37:19 2008 done: Mon Aug 11 12:40:32 2008
 Total Scan time: 509.220 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]