hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12454076/chunk_1/iprscan-20080811-12454076.nocrc
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Query sequence: fk13090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00168.20.fs  C2 domain                                219.9    8.3e-65   2
PF00168.20.ls  C2 domain                                223.9    3.4e-64   2
PF02318.7.ls   Rabphilin-3A effector domain            -125.8      0.012   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02318.7.ls     1/1       1   220 [.     1   310 []  -125.8    0.012
PF00168.20.fs    1/2     374   463 ..     1    88 []   108.3  1.2e-31
PF00168.20.ls    1/2     374   463 ..     1    88 []   110.3  5.1e-30
PF00168.20.ls    2/2     529   618 ..     1    88 []   113.5  5.5e-31
PF00168.20.fs    2/2     529   618 ..     1    88 []   111.5  1.3e-32

Alignments of top-scoring domains:
PF02318.7.ls: domain 1 of 1, from 1 to 220: score -125.8, E = 0.012
                   *->MaDtvvsstqdkWvcPsDRPLqlalraqLqaGWSVhtGaqARSPTdk
                          + s               l +                      
     fk13090     1    ----IMS--------------ELLD-------------LS------- 9    

                   qrktesLtaeEkEvIqkViarAEkleslEQqRIGrLVdRLEtMrknvaGn
                         L+ eEk  I+ V++r E+       RI rL   L   +++ a  
     fk13090    10 -----FLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKR 54   

                   GVsr.....CLLCgeeLGlLgSkSYAvvCkDCrKkVCtkNCGVEtsdVNq
                   G  + ++++C  C e LG L  k     C  C   VC   C +  s+   
     fk13090    55 GSQHysdrtCARCQESLGRLSPKT--NTCRGCNHLVCRD-CRIQESN--- 98   

                   ttgkkepvwLCKICsEqREVLWKrSGAWFY.KglPkfvLPlktP...qrk
                           w CK+C    E   K  G WFY+     f    +t ++ +r 
     fk13090    99 ------GTWRCKVCAKEIEL-KKATGDWFYdQKVNRF--AYRTGseiIRM 139  

                   ddplFrPly.vpaTeeqplpeessaartParGRvvssDsDsDsDLsssdl
                     ++ +P+ +   T  q l         +   +++               
     fk13090   140 SLRH-KPAVsKRETVGQSLLHQTQMGDIWPGRKIIQ-------------- 174  

                   EDRraPggakGpkltkapgdSSgsmetprWaSpArmsstlldsegWdlGs
                   E  + P+      +    g+S    e+          s + ds++     
     fk13090   175 ERQKEPSVL-FEVPKLKSGKSALEAESES------LDSFTADSDS----- 212  

                   etGAGdTsrlPnGetllRRetsv<-*
                         Ts         RR+      
     fk13090   213 ------TS---------RRDSLD    220  

PF00168.20.fs: domain 1 of 2, from 374 to 463: score 108.3, E = 1.2e-31
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V+v+e++ L+  D+++  s+PYVk yl++dk+++ k+kT+++++t
     fk13090   374    LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRqGKRKTSIKRDT 420  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    NP ++Et+ +e+p+  l+++tL+++V++++rfgr+ flGe++   
     fk13090   421 VNPLYDETLRYEIPESLLAQrTLQFSVWHHGRFGRNTFLGEAE    463  

PF00168.20.ls: domain 1 of 2, from 374 to 463: score 110.3, E = 5.1e-30
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L+V+v+e++ L+  D+++  s+PYVk yl++dk+++ k+kT+++++t
     fk13090   374    LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRqGKRKTSIKRDT 420  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    NP ++Et+ +e+p+  l+++tL+++V++++rfgr+ flGe++   
     fk13090   421 VNPLYDETLRYEIPESLLAQrTLQFSVWHHGRFGRNTFLGEAE    463  

PF00168.20.ls: domain 2 of 2, from 529 to 618: score 113.5, E = 5.5e-31
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V+++eAknL +   ++g+sD +Vk yl++++ + +k+kT v kkt
     fk13090   529    LQVWIKEAKNLTAAK-AGGTSDSFVKGYLLPMRNKaSKRKTPVMKKT 574  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP +N tF++++v ++dlq+ +Le++V+D+  + ++dflG v+   
     fk13090   575 LNPHYNHTFVYNgVRLEDLQHmCLELTVWDREPLASNDFLGGVR    618  

PF00168.20.fs: domain 2 of 2, from 529 to 618: score 111.5, E = 1.3e-32
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V+++eAknL +   ++g+sD +Vk yl++++ + +k+kT v kkt
     fk13090   529    LQVWIKEAKNLTAAK-AGGTSDSFVKGYLLPMRNKaSKRKTPVMKKT 574  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP +N tF++++v ++dlq+ +Le++V+D+  + ++dflG v+   
     fk13090   575 LNPHYNHTFVYNgVRLEDLQHmCLELTVWDREPLASNDFLGGVR    618  

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