hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12454076/chunk_1/iprscan-20080811-12454076.nocrc
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Query sequence: fk13090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 133.1    2.9e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     373   478 ..     1    92 []    71.7  9.3e-17
SM00239    2/2     528   633 ..     1    92 []    61.5  1.1e-13

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 373 to 478: score 71.7, E = 9.3e-17
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                      +L v+++++++L   +  +++++PYVk +  +++++++++kT+++++
     fk13090   373    SLVVHVKECHQLAyadeakkrsNPYVKTYllpdksrqgkrKTSIKRD 419  

                   tlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvt
                   t    NP ++E   t+ +e+p++   +++L+++V+++++ +++ f+G+++
     fk13090   420 TV---NPLYDE---TLRYEIPEsllaqRtLQFSVWHHgrfgrnTFLGEAE 463  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   i               +++ +   + +++   
     fk13090   464 IQ--------------MDSWKlDKKLdHC    478  

SM00239: domain 2 of 2, from 528 to 633: score 61.5, E = 1.1e-13
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                       L v+i++A+nL   + ++++D +Vk +  + +++ +++kT v kkt
     fk13090   528    ELQVWIKEAKNLTaakaggtsDSFVKGYllpmrnkaskrKTPVMKKT 574  

                   lsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvt
                   l   NP++n+   tF+++ ++ ++ ++  Le++V+D+++  ++df+G v+
     fk13090   575 L---NPHYNH---TFVYNGVRledlqhMcLELTVWDReplasnDFLGGVR 618  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   ++              + + +++g+   +   
     fk13090   619 LG--------------VGTGIsNGEVvDW    633  

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