# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk13135.fasta.nr -Q fk13135.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk13135, 112 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842565 sequences Expectation_n fit: rho(ln(x))= 5.1556+/-0.000179; mu= 5.4327+/- 0.010 mean_var=59.5795+/-11.633, 0's: 53 Z-trim: 57 B-trim: 0 in 0/67 Lambda= 0.166160 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088690|dbj|BAD92792.1| transgelin variant [Ho ( 112) 754 188.1 2.1e-46 gi|73954723|ref|XP_861115.1| PREDICTED: similar to ( 220) 635 159.7 1.4e-37 gi|62897565|dbj|BAD96722.1| transgelin variant [Ho ( 184) 625 157.2 6.5e-37 gi|3123283|sp|Q01995|TAGL_HUMAN Transgelin (Smooth ( 201) 625 157.3 7.1e-37 gi|49168456|emb|CAG38723.1| TAGLN [Homo sapiens] ( 201) 625 157.3 7.1e-37 gi|84578955|dbj|BAE72911.1| hypothetical protein [ ( 201) 625 157.3 7.1e-37 gi|119587704|gb|EAW67300.1| transgelin, isoform CR ( 211) 625 157.3 7.4e-37 gi|73954721|ref|XP_861087.1| PREDICTED: similar to ( 196) 619 155.8 1.9e-36 gi|114640488|ref|XP_001155771.1| PREDICTED: SID1 t ( 867) 625 157.6 2.5e-36 gi|114640466|ref|XP_001156008.1| PREDICTED: SID1 t (1017) 625 157.6 2.8e-36 gi|114640464|ref|XP_001155952.1| PREDICTED: SID1 t (1021) 625 157.6 2.8e-36 gi|114640470|ref|XP_001155830.1| PREDICTED: SID1 t (1025) 625 157.6 2.8e-36 gi|114640462|ref|XP_001155892.1| PREDICTED: simila (1038) 625 157.6 2.9e-36 gi|177175|gb|AAA58351.1| smooth muscle protein ( 201) 615 154.9 3.7e-36 gi|109940320|sp|Q9TS87|TAGL_BOVIN Transgelin (Smoo ( 201) 615 154.9 3.7e-36 gi|158328502|dbj|BAF85998.1| transgelin [Equus cab ( 201) 615 154.9 3.7e-36 gi|90969255|gb|ABE02694.1| transgelin [Cervus elap ( 204) 615 154.9 3.8e-36 gi|73954719|ref|XP_536561.2| PREDICTED: similar to ( 201) 611 153.9 7.2e-36 gi|126326610|ref|XP_001370893.1| PREDICTED: simila ( 201) 610 153.7 8.5e-36 gi|401095|sp|P31232|TAGL_RAT Transgelin (Smooth mu ( 201) 609 153.4 1e-35 gi|179032|gb|AAA58375.1| SM22 ( 201) 608 153.2 1.2e-35 gi|149041545|gb|EDL95386.1| rCG58175, isoform CRA_ ( 166) 607 152.9 1.2e-35 gi|159163152|pdb|1UJO|A Chain A, Solution Structur ( 144) 606 152.6 1.2e-35 gi|1351075|sp|P37804|TAGL_MOUSE Transgelin (Smooth ( 201) 606 152.7 1.7e-35 gi|149041543|gb|EDL95384.1| rCG58175, isoform CRA_ ( 156) 603 151.9 2.2e-35 gi|401094|sp|P19966|TAGL_CHICK Transgelin (Smooth ( 200) 583 147.2 7.5e-34 gi|60688407|gb|AAH91023.1| Transgelin [Xenopus tro ( 201) 553 140.0 1.1e-31 gi|54311264|gb|AAH84848.1| LOC495380 protein [Xeno ( 201) 548 138.8 2.5e-31 gi|38197305|gb|AAH61650.1| MGC68550 protein [Xenop ( 200) 546 138.3 3.5e-31 gi|543113|pir||PC2038 smooth muscle protein SM22 h ( 171) 543 137.6 5.1e-31 gi|545605|gb|AAB30028.1| F-actin-binding protein=2 ( 76) 501 127.3 2.7e-28 gi|33151117|gb|AAP97435.1| SM22 [Oryctolagus cunic ( 71) 452 115.6 8.8e-25 gi|28195695|gb|AAO27766.1| neuronal 22 protein [Ga ( 147) 449 115.0 2.7e-24 gi|47223344|emb|CAG04205.1| unnamed protein produc ( 224) 448 114.9 4.6e-24 gi|126325697|ref|XP_001362534.1| PREDICTED: simila ( 199) 442 113.4 1.1e-23 gi|33860182|sp|Q9UI15|TAGL3_HUMAN Transgelin-3 (Ne ( 199) 436 111.9 3e-23 gi|75041294|sp|Q5R6R2.1|TAGL3_PONAB Transgelin-3 ( 199) 436 111.9 3e-23 gi|33150574|gb|AAP97165.1|AF087855_1 neuronal prot ( 221) 436 112.0 3.3e-23 gi|12850863|dbj|BAB28876.1| unnamed protein produc ( 143) 433 111.2 3.8e-23 gi|122890855|emb|CAM14171.1| novel protein similar ( 213) 435 111.7 3.8e-23 gi|6563190|gb|AAF17189.1|AF112201_1 neuronal prote ( 282) 436 112.0 4.1e-23 gi|47224885|emb|CAG06455.1| unnamed protein produc ( 204) 434 111.5 4.3e-23 gi|109895135|sp|Q3ZBY2|TAGL3_BOVIN Transgelin-3 ( 199) 433 111.2 5e-23 gi|57109526|ref|XP_535738.1| PREDICTED: similar to ( 199) 433 111.2 5e-23 gi|124056477|sp|P37805|TAGL3_RAT Transgelin-3 (Neu ( 199) 433 111.2 5e-23 gi|9910790|sp|Q9R1Q8|TAGL3_MOUSE Transgelin-3 (Neu ( 199) 433 111.2 5e-23 gi|205755|gb|AAC42095.1| neuronal protein ( 219) 433 111.3 5.4e-23 gi|149622815|ref|XP_001510435.1| PREDICTED: simila ( 199) 432 111.0 5.9e-23 gi|50729726|ref|XP_416634.1| PREDICTED: hypothetic ( 199) 432 111.0 5.9e-23 gi|157929914|gb|ABW04145.1| smooth muscle cell-spe ( 207) 421 108.4 3.8e-22 >>gi|62088690|dbj|BAD92792.1| transgelin variant [Homo s (112 aa) initn: 754 init1: 754 opt: 754 Z-score: 988.3 bits: 188.1 E(): 2.1e-46 Smith-Waterman score: 754; 100.000% identity (100.000% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 10 20 30 40 50 60 70 80 90 100 110 fk1313 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAPRELGSPHGVGGGLF :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAPRELGSPHGVGGGLF 70 80 90 100 110 >>gi|73954723|ref|XP_861115.1| PREDICTED: similar to tra (220 aa) initn: 635 init1: 635 opt: 635 Z-score: 829.6 bits: 159.7 E(): 1.4e-37 Smith-Waterman score: 635; 95.960% identity (97.980% similar) in 99 aa overlap (1-99:61-159) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|739 VEWIVMQCGSDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::: ::::::::::.::::.::::::::::::::::::::::::::: gi|739 MEQVAQFLKAAEDYGVTKTDMFQTVDLYEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF ::::::: : gi|739 WFMKYVAARVPCPESLSWLPTSRKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMT 160 170 180 190 200 210 >>gi|62897565|dbj|BAD96722.1| transgelin variant [Homo s (184 aa) initn: 625 init1: 625 opt: 625 Z-score: 817.8 bits: 157.2 E(): 6.5e-37 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:61-154) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|628 VEWIIVQRGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|628 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRG 160 170 180 >>gi|3123283|sp|Q01995|TAGL_HUMAN Transgelin (Smooth mus (201 aa) initn: 625 init1: 625 opt: 625 Z-score: 817.3 bits: 157.3 E(): 7.1e-37 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:61-154) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|312 VEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|312 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 160 170 180 190 200 >>gi|49168456|emb|CAG38723.1| TAGLN [Homo sapiens] (201 aa) initn: 625 init1: 625 opt: 625 Z-score: 817.3 bits: 157.3 E(): 7.1e-37 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:61-154) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|491 VEWIIVQCGPDVGRPDRGRLGSQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|491 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|491 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 160 170 180 190 200 >>gi|84578955|dbj|BAE72911.1| hypothetical protein [Maca (201 aa) initn: 625 init1: 625 opt: 625 Z-score: 817.3 bits: 157.3 E(): 7.1e-37 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:61-154) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|845 VEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|845 WFMKKAQEHKREFTESQLQEGKHVIGLQMGTNRGASQAGMTGYGRPRQIIS 160 170 180 190 200 >>gi|119587704|gb|EAW67300.1| transgelin, isoform CRA_c (211 aa) initn: 625 init1: 625 opt: 625 Z-score: 816.9 bits: 157.3 E(): 7.4e-37 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:71-164) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|119 VEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 50 60 70 80 90 100 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 110 120 130 140 150 160 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|119 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 170 180 190 200 210 >>gi|73954721|ref|XP_861087.1| PREDICTED: similar to tra (196 aa) initn: 619 init1: 619 opt: 619 Z-score: 809.6 bits: 155.8 E(): 1.9e-36 Smith-Waterman score: 619; 96.842% identity (98.947% similar) in 95 aa overlap (1-95:61-155) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|739 VEWIVMQCGSDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 40 50 60 70 80 90 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::: ::::::::::.::::.::::::::::::::::::::::::::: gi|739 MEQVAQFLKAAEDYGVTKTDMFQTVDLYEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPN 100 110 120 130 140 150 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF ::::: gi|739 WFMKYREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 160 170 180 190 >>gi|114640488|ref|XP_001155771.1| PREDICTED: SID1 trans (867 aa) initn: 625 init1: 625 opt: 625 Z-score: 807.5 bits: 157.6 E(): 2.5e-36 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:727-820) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|114 VEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 700 710 720 730 740 750 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 760 770 780 790 800 810 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|114 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 820 830 840 850 860 >>gi|114640466|ref|XP_001156008.1| PREDICTED: SID1 trans (1017 aa) initn: 625 init1: 625 opt: 625 Z-score: 806.4 bits: 157.6 E(): 2.8e-36 Smith-Waterman score: 625; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:877-970) 10 20 30 fk1313 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQ :::::::::::::::::::::::::::::: gi|114 VEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQ 850 860 870 880 890 900 40 50 60 70 80 90 fk1313 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPN 910 920 930 940 950 960 100 110 fk1313 WFMKYVAPRELGSPHGVGGGLF :::: gi|114 WFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 970 980 990 1000 1010 112 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 12:48:56 2008 done: Mon Aug 11 12:52:10 2008 Total Scan time: 512.150 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]