hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12521127/chunk_1/iprscan-20080811-12521127.nocrc
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Query sequence: fk13135
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00307.21.fs Calponin homology (CH) domain                   61.3      9e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.fs   1/1       1    78 [.    44   122 .]    61.3    9e-16

Alignments of top-scoring domains:
PF00307.21.fs: domain 1 of 1, from 1 to 78: score 61.3, E = 9e-16
                   *->aLcaLlnklrPglidkkkv...pslsrfdkleNlnlaldaaekeGlg
                      +L +L+n+l+P+  +++kv+++p+ + f+++e + ++l+aae++G++
     fk13135     1    ILSKLVNSLYPDGSKPVKVpenPPSMVFKQMEQVAQFLKAAEDYGVI 47   

                   iilvlidpeDivegnpdPDeklvltllwqLirrfq<-*
                   + +++++++D++eg++   +  v+++l++L   +    
     fk13135    48 K-TDMFQTVDLFEGKD---MAAVQRTLMALGSLAV    78   

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