hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12575433/chunk_1/iprscan-20080811-12575433.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk13183
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                 11.8    0.00027   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/1     290   349 ..     1    57 []    11.8  0.00027

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 1, from 290 to 349: score 11.8, E = 0.00027
                   *->rrkRTtftpeQleeLEk.eFqk..nrYPsreeReeLAkkLgLterqV
                       +kR +f +  ++++ + +Fq  +++YPs e+ ++LA+ +gLt  qV
     fk13183   290    QKKRGIFPKVATNIMRAwLFQHltHPYPSEEQKKQLAQDTGLTILQV 336  

                   kvWFQNRRaKwKk<-*
                    +WF N R +  +   
     fk13183   337 NNWFINARRRIVQ    349  

//