hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-12575433/chunk_1/iprscan-20080811-12575433.nocrc
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Query sequence: fk13183
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00389                                                  55.7    5.8e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00389    1/1     289   354 ..     1    63 []    55.7  5.8e-12

Alignments of top-scoring domains:
SM00389: domain 1 of 1, from 289 to 354: score 55.7, E = 5.8e-12
                   *->krrkRtsftpeQleeLEkeFeknp...YPsreereeLAkeLgLterq
                      +++kR +f + ++ +++++  ++ +++YPs+e++++LA+ +gLt  q
     fk13183   289    RQKKRGIFPKVATNIMRAWLFQHLthpYPSEEQKKQLAQDTGLTILQ 335  

                   VkvWFQNRRakwkrqekkk<-*
                   V++WF N+R++    ++++   
     fk13183   336 VNNWFINARRRIVQPMIDQ    354  

//