hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13235842/chunk_1/iprscan-20090618-13235842.nocrc
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Query sequence: fk13225
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF02177.7.fs Amyloid A4 extracellular domain             448.8   1.4e-215   1
PF02177.7.ls Amyloid A4 extracellular domain             450.8   1.7e-132   1
PF00014.13.fs Kunitz/Bovine pancreatic trypsin inhibito    99.7    2.6e-34   1
PF00014.13.ls Kunitz/Bovine pancreatic trypsin inhibito   101.7    2.1e-27   1
PF03494.4.fs Beta-amyloid peptide (beta-APP)              98.5    4.7e-27   1
PF03494.4.ls Beta-amyloid peptide (beta-APP)             100.5    4.8e-27   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02177.7.fs   1/1      63   227 ..     1   182 []   448.8 1.4e-215
PF02177.7.ls   1/1      63   227 ..     1   182 []   450.8 1.7e-132
PF00014.13.fs   1/1     329   381 ..     1    54 []    99.7  2.6e-34
PF00014.13.ls   1/1     329   381 ..     1    54 []   101.7  2.1e-27
PF03494.4.fs   1/1     714   752 ..     1    39 []    98.5  4.7e-27
PF03494.4.ls   1/1     714   752 ..     1    39 []   100.5  4.8e-27

Alignments of top-scoring domains:
PF02177.7.fs: domain 1 of 1, from 63 to 227: score 448.8, E = 1.4e-215
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      g+a+++aePQiAm+CG    rln+hmn+++G+W++Dps+tk   tC+
     fk13225    63    GNAGLLAEPQIAMFCG----RLNMHMNVQNGKWDSDPSGTK---TCI 102  

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                   ++Ke++LqYC+++YPelqITNvvEa+qpv+I++WC+rg   r+qCk+hp 
     fk13225   103 DTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG---RKQCKTHP- 148  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                   h+ViP+rCLvGEFvSdALLVP++C+FlHqermd+Ce+h++Wh++ake+Cs
     fk13225   149 HFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCS 198  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ek      +++l+++gMLLPCGiDkFrGVEFVCCP   
     fk13225   199 EK------STNLHDYGMLLPCGIDKFRGVEFVCCP    227  

PF02177.7.ls: domain 1 of 1, from 63 to 227: score 450.8, E = 1.7e-132
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      g+a+++aePQiAm+CG    rln+hmn+++G+W++Dps+tk   tC+
     fk13225    63    GNAGLLAEPQIAMFCG----RLNMHMNVQNGKWDSDPSGTK---TCI 102  

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                   ++Ke++LqYC+++YPelqITNvvEa+qpv+I++WC+rg   r+qCk+hp 
     fk13225   103 DTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG---RKQCKTHP- 148  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                   h+ViP+rCLvGEFvSdALLVP++C+FlHqermd+Ce+h++Wh++ake+Cs
     fk13225   149 HFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCS 198  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ek      +++l+++gMLLPCGiDkFrGVEFVCCP   
     fk13225   199 EK------STNLHDYGMLLPCGIDKFRGVEFVCCP    227  

PF00014.13.fs: domain 1 of 1, from 329 to 381: score 99.7, E = 2.6e-34
                   *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle
                      +Cs+++++GpC+++i  R+y++ + g+C pF+YgGCgGN+NNF+t+e
     fk13225   329    VCSEQAETGPCRAMI-SRWYFDVTEGKCAPFFYGGCGGNRNNFDTEE 374  

                   eCertCg<-*
                    C+ +Cg   
     fk13225   375 YCMAVCG    381  

PF00014.13.ls: domain 1 of 1, from 329 to 381: score 101.7, E = 2.1e-27
                   *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle
                      +Cs+++++GpC+++i  R+y++ + g+C pF+YgGCgGN+NNF+t+e
     fk13225   329    VCSEQAETGPCRAMI-SRWYFDVTEGKCAPFFYGGCGGNRNNFDTEE 374  

                   eCertCg<-*
                    C+ +Cg   
     fk13225   375 YCMAVCG    381  

PF03494.4.fs: domain 1 of 1, from 714 to 752: score 98.5, E = 4.7e-27
                   *->eaeergsEvyHqKLvFFAEDvssnKGAiiGLmvGGvviA<-*
                      +++++g+Ev+HqKLvFFAEDv+snKGAiiGLmvGGvviA   
     fk13225   714    FRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA    752  

PF03494.4.ls: domain 1 of 1, from 714 to 752: score 100.5, E = 4.8e-27
                   *->eaeergsEvyHqKLvFFAEDvssnKGAiiGLmvGGvviA<-*
                      +++++g+Ev+HqKLvFFAEDv+snKGAiiGLmvGGvviA   
     fk13225   714    FRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA    752  

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