hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-13150344/chunk_1/iprscan-20080811-13150344.nocrc
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Query sequence: fk13476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    146.7    5.7e-41   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    142.9    7.8e-40   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2      50   118 ..     1    74 []    81.8  3.6e-22
PF00076.12.ls   1/2      50   118 ..     1    74 []    83.7  5.3e-22
PF00076.12.fs   2/2     155   219 ..     1    74 []    61.2  2.2e-16
PF00076.12.ls   2/2     155   219 ..     1    74 []    63.0  8.9e-16

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 50 to 118: score 81.8, E = 3.6e-22
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      ++VgNLppd+  +d++d F k+G i +i++++          +faFV
     fk13476    50    IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-----RGGPPFAFV 91   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eFed++dAe+A+   +G+ ++g +lrv   
     fk13476    92 EFEDPRDAEDAVYGRDGYDYDGYRLRV    118  

PF00076.12.ls: domain 1 of 2, from 50 to 118: score 83.7, E = 5.3e-22
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      ++VgNLppd+  +d++d F k+G i +i++++          +faFV
     fk13476    50    IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-----RGGPPFAFV 91   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eFed++dAe+A+   +G+ ++g +lrv   
     fk13476    92 EFEDPRDAEDAVYGRDGYDYDGYRLRV    118  

PF00076.12.fs: domain 2 of 2, from 155 to 219: score 61.2, E = 2.2e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V++Lpp+ +++dLkd+ ++ G++  +++ rD         G + V
     fk13476   155    VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------GTGVV 192  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF  +ed++ A+++l++++++++e+     
     fk13476   193 EFVRKEDMTYAVRKLDNTKFRSHEVGY    219  

PF00076.12.ls: domain 2 of 2, from 155 to 219: score 63.0, E = 8.9e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V++Lpp+ +++dLkd+ ++ G++  +++ rD         G + V
     fk13476   155    VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------GTGVV 192  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF  +ed++ A+++l++++++++e+     
     fk13476   193 EFVRKEDMTYAVRKLDNTKFRSHEVGY    219  

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