hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-13150344/chunk_1/iprscan-20080811-13150344.nocrc
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Query sequence: fk13476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 128.8    5.7e-34   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2      49   119 ..     1   121 []    79.8  3.4e-19
SM00360    2/2     154   220 ..     1   121 []    49.1    6e-10

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 49 to 119: score 79.8, E = 3.4e-19
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++VgNL  ppd+  +d++++F               k+G ++++++
     fk13476    49    RIYVGNL--PPDIRTKDIEDVF--------------YKYGAIRDIDL 79   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    + +                            faFVeFed++dAe+A  +
     fk13476    80 KNRRG------------------------GPPFAFVEFEDPRDAEDA--V 103  

                   ealnaskGkeledgGrptlglrVe<-*
                      +   G++   +G +   lrVe   
     fk13476   104 YGRD---GYDY--DGYR---LRVE    119  

SM00360: domain 2 of 2, from 154 to 220: score 49.1, E = 6e-10
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++ V++L  pp+ +++dL+++               ++ G+v ++++
     fk13476   154    RVVVSGL--PPSGSWQDLKDHM--------------REAGDVCYADV 184  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    rd                            G + VeF  +ed+  A  +
     fk13476   185 YRD----------------------------GTGVVEFVRKEDMTYA--V 204  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l+   ++++    ++   +      
     fk13476   205 RKLD---NTKF--RSHE---VGYT    220  

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