hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-13262909/chunk_1/iprscan-20080811-13262909.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk13658
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00010.16.fs Helix-loop-helix DNA-binding domain             50.9    5.7e-13   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             52.9    9.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1      65   117 ..     1    53 []    50.9  5.7e-13
PF00010.16.ls   1/1      65   117 ..     1    53 []    52.9  9.9e-13

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 65 to 117: score 50.9, E = 5.7e-13
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       R +hn++E+ RR++++  +e+L++l+P +++s++ + ++ L++A  
     fk13658    65    NRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKV 111  

                   YIksLq<-*
                   +Ik+L+   
     fk13658   112 HIKKLE    117  

PF00010.16.ls: domain 1 of 1, from 65 to 117: score 52.9, E = 9.9e-13
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       R +hn++E+ RR++++  +e+L++l+P +++s++ + ++ L++A  
     fk13658    65    NRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKV 111  

                   YIksLq<-*
                   +Ik+L+   
     fk13658   112 HIKKLE    117  

//