hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-13474906/chunk_1/iprscan-20080811-13474906.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk13921 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 73.0 1.7e-24 1 PF00560.23.ls Leucine Rich Repeat 87.7 3.3e-23 8 PF00560.23.fs Leucine Rich Repeat 74.6 2.3e-19 9 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 58.0 2.9e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/8 45 67 .. 1 24 [] 17.6 0.042 PF00560.23.fs 2/9 45 67 .. 1 24 [] 15.7 0.003 PF00560.23.ls 2/8 69 91 .. 1 24 [] 12.4 1.2 PF00560.23.ls 4/8 118 140 .. 1 24 [] 9.3 4.9 PF00560.23.ls 5/8 142 164 .. 1 24 [] 8.6 6.4 PF00560.23.ls 6/8 166 188 .. 1 24 [] 16.3 0.1 PF00560.23.fs 7/9 166 188 .. 1 24 [] 14.4 0.0069 PF00560.23.fs 8/9 190 212 .. 1 24 [] 11.0 0.06 PF00560.23.ls 7/8 190 212 .. 1 24 [] 12.8 1 PF00001.12.ls 1/1 292 551 .. 1 272 [] 58.0 2.9e-14 PF00001.12.fs 1/1 355 551 .. 58 272 .] 73.0 1.7e-24 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 8, from 45 to 67: score 17.6, E = 0.042 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+Ls+ N ++t l ++ +++l fk13921 45 SLTKLYLSH-N-RIT-FLKPGvFeDL 67 PF00560.23.fs: domain 2 of 9, from 45 to 67: score 15.7, E = 0.003 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+Ls+ N ++t l ++ +++l fk13921 45 SLTKLYLSH-N-RIT-FLKPGvFeDL 67 PF00560.23.ls: domain 2 of 8, from 69 to 91: score 12.4, E = 1.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+L +++ N +l+ +++ ++ +l fk13921 69 RLEWLIIED-N-HLS-RISPPtFyGL 91 PF00560.23.ls: domain 4 of 8, from 118 to 140: score 9.3, E = 4.9 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L +LdL+g N ++ +l + ++ ++ fk13921 118 RLHWLDLEG-N-HIH-NLRNLtFiSC 140 PF00560.23.ls: domain 5 of 8, from 142 to 164: score 8.6, E = 6.4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L ++ N +++ +l ++++ l fk13921 142 NLTVLVMRK-N-KIN-HLNENtFaPL 164 PF00560.23.ls: domain 6 of 8, from 166 to 188: score 16.3, E = 0.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdL++ N +++ +lp+ +++l fk13921 166 KLDELDLGS-N-KIE-NLPPLiFkDL 188 PF00560.23.fs: domain 7 of 9, from 166 to 188: score 14.4, E = 0.0069 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdL++ N +++ +lp+ +++l fk13921 166 KLDELDLGS-N-KIE-NLPPLiFkDL 188 PF00560.23.fs: domain 8 of 9, from 190 to 212: score 11.0, E = 0.06 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L L+Ls+ N +++ +++++ ++ l fk13921 190 ELSQLNLSY-N-PIQ-KIQANqFdYL 212 PF00560.23.ls: domain 7 of 8, from 190 to 212: score 12.8, E = 1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L L+Ls+ N +++ +++++ ++ l fk13921 190 ELSQLNLSY-N-PIQ-KIQANqFdYL 212 PF00001.12.ls: domain 1 of 1, from 292 to 551: score 58.0, E = 2.9e-14 *->GNlLVilvilrtkklrtptnif...ilNLAvADLLflltlppwalyy GN++Vi + r+ ++ +i++L+ AD L+++ l ++ fk13921 292 GNIFVI---CMRPYIRSENKLYamsIISLCCADCLMGIYLFVIGGFD 335 lvgg.edWpfGs.....alCklvtaldvvnmyaSillLtaISiDRYlAIv l + +e+ + ++ C lv++l ++++ +S+llLt+++++ Y+ Iv fk13921 336 LKFRgEYNKHAQlwmesTHCQLVGSLAILSTEVSVLLLTFLTLEKYICIV 385 hPlryrrrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvn +P+r r r+ v++l+W+ +++++++p +s+ +++ + g+ fk13921 386 YPFRCVRPGKC--RTITVLILIWITGFIVAFIP--LSNKEFFKNYYGT-- 429 vttClidfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtl +C++ e++ +++ +y + ++l+ + +++i++ Y+ ++ + fk13921 430 NGVCFPLHSEDT---ESIGAQIYSVAIFLGINLAAFIIIVFSYGSMFYSV 476 rkrarkgas.kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.l +++a+ ++ + +++ke+ +ak + +v++ +lCW P f+v +l l + fk13921 477 HQSAITATEiRNQVKKEMILAKRFFFIVFTDALCWIPIFVVKFLSLLQvE 526 siimsssCelervlptallvtlwLay.vNsclNPiIY<-* + t++++ + + ++Ns+lNPi+Y fk13921 527 I------------PGTITSWVVIFILpINSALNPILY 551 PF00001.12.fs: domain 1 of 1, from 355 to 551: score 73.0, E = 1.7e-24 *->CklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrrtsprrAk C lv++l ++++ +S+llLt+++++ Y+ Iv+P+r r r+ fk13921 355 CQLVGSLAILSTEVSVLLLTFLTLEKYICIVYPFRCVRPGKC--RTI 399 vvillvWvlalllslPpllfswvktveegngvvnvttClidfpevstasv v++l+W+ +++++++p +s+ +++ + g+ +C++ e++ + fk13921 400 TVLILIWITGFIVAFIP--LSNKEFFKNYYGT--NGVCFPLHSEDT---E 442 ktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas.kkrssk ++ +y + ++l+ + +++i++ Y+ ++ ++++a+ ++ + +++k fk13921 443 SIGAQIYSVAIFLGINLAAFIIIVFSYGSMFYSVHQSAITATEiRNQVKK 492 erkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCelervlpt e+ +ak + +v++ +lCW P f+v +l l + + t fk13921 493 EMILAKRFFFIVFTDALCWIPIFVVKFLSLLQvEI------------PGT 530 allvtlwLay.vNsclNPiIY<-* ++++ + + ++Ns+lNPi+Y fk13921 531 ITSWVVIFILpINSALNPILY 551 //