hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-13474906/chunk_1/iprscan-20080811-13474906.nocrc
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Query sequence: fk13921
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00369                                                 115.0    8.3e-30   8
SM00365                                                  30.3    0.00027   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00369      1/8      14    42 ..     1    24 []     0.9  3.3e+02
SM00365      1/3      43    69 ..     1    22 []    11.1       35
SM00369      2/8      43    66 ..     1    24 []    30.2  0.00028
SM00369      3/8      67    90 ..     1    24 []    13.4      9.6
SM00365      2/3     116   137 ..     1    22 []     2.3  4.3e+02
SM00369      4/8     116   139 ..     1    24 []    14.3      7.4
SM00369      5/8     140   163 ..     1    24 []     7.7       47
SM00365      3/3     164   182 ..     1    22 []    16.9      2.9
SM00369      6/8     164   187 ..     1    24 []    25.9   0.0058
SM00369      7/8     188   211 ..     1    24 []    14.2      7.8
SM00369      8/8     212   235 ..     1    24 []     8.5       39

Alignments of top-scoring domains:
SM00369: domain 1 of 8, from 14 to 42: score 0.9, E = 3.3e+02
                   *->LpnLre.....LdLsnNqLtsLPpgaFqg<-*
                      L +L  ++++  +L+nN++ts+   aF+g   
     fk13921    14    LKSLLYhsrnlGYLQNNKITSISIYAFRG    42   

SM00365: domain 1 of 3, from 43 to 69: score 11.1, E = 35
                   *->LtnLeeLdLsqNkI.....kkiENLde<-*
                      L  L+ L+Ls+N+I+  ++  +E+L+    
     fk13921    43    LNSLTKLYLSHNRItflkpGVFEDLHR    69   

SM00369: domain 2 of 8, from 43 to 66: score 30.2, E = 0.00028
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L+Ls+N++t L pg+F++   
     fk13921    43    LNSLTKLYLSHNRITFLKPGVFED    66   

SM00369: domain 3 of 8, from 67 to 90: score 13.4, E = 9.6
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L+ L  ++N+L+++ p +F g   
     fk13921    67    LHRLEWLIIEDNHLSRISPPTFYG    90   

SM00365: domain 2 of 3, from 116 to 137: score 2.3, E = 4.3e+02
                   *->LtnLeeLdLsqNkIkkiENLde<-*
                      + +L  LdL +N I+ + NL     
     fk13921   116    MPRLHWLDLEGNHIHNLRNLTF    137  

SM00369: domain 4 of 8, from 116 to 139: score 14.3, E = 7.4
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      +p L  LdL++N++  L + +F +   
     fk13921   116    MPRLHWLDLEGNHIHNLRNLTFIS    139  

SM00369: domain 5 of 8, from 140 to 163: score 7.7, E = 47
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       +nL++L    N++ +L +++F++   
     fk13921   140    CSNLTVLVMRKNKINHLNENTFAP    163  

SM00365: domain 3 of 3, from 164 to 182: score 16.9, E = 2.9
                   *->LtnLeeLdLsqNkIkkiENLde<-*
                      L++L eLdL++NkI   ENL     
     fk13921   164    LQKLDELDLGSNKI---ENLPP    182  

SM00369: domain 6 of 8, from 164 to 187: score 25.9, E = 0.0058
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L eLdL++N+++ LPp +F +   
     fk13921   164    LQKLDELDLGSNKIENLPPLIFKD    187  

SM00369: domain 7 of 8, from 188 to 211: score 14.2, E = 7.8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L  L+Ls+N ++ + ++ F+    
     fk13921   188    LKELSQLNLSYNPIQKIQANQFDY    211  

SM00369: domain 8 of 8, from 212 to 235: score 8.5, E = 39
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+L++  ++ + +++F++   
     fk13921   212    LVKLKSLSLEGIEISNIQQRMFRP    235  

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