hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-13562032/chunk_1/iprscan-20080811-13562032.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk13965y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.fs Dynein heavy chain 1003.2 2.1e-302 1 PF03028.6.ls Dynein heavy chain 1005.0 2.4e-299 1 PF08393.3.fs Dynein heavy chain, N-terminal region 2 593.1 2.2e-176 1 PF08393.3.ls Dynein heavy chain, N-terminal region 2 595.1 6.1e-176 1 PF07728.4.fs ATPase family associated with various ce 91.7 1.5e-26 5 PF07728.4.ls ATPase family associated with various ce 72.7 1.1e-18 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08393.3.ls 1/1 100 512 .. 1 427 [] 595.1 6.1e-176 PF08393.3.fs 1/1 100 512 .. 1 427 [] 593.1 2.2e-176 PF07728.4.fs 2/5 956 1101 .. 1 184 [] 40.7 1.2e-11 PF07728.4.ls 1/2 956 1101 .. 1 184 [] 42.5 1.3e-09 PF07728.4.ls 2/2 1298 1445 .. 1 184 [] 30.2 6.8e-06 PF03028.6.fs 1/1 2606 3317 .. 1 783 [] 1003.2 2.1e-302 PF03028.6.ls 1/1 2606 3317 .. 1 783 [] 1005.0 2.4e-299 Alignments of top-scoring domains: PF08393.3.ls: domain 1 of 1, from 100 to 512: score 595.1, E = 6.1e-176 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee peL ++++E+ l+ +++ly+ +ew +t+W+ l +++ l+e fk13965y2 100 PELLKVQKEMSGLRMIYELYEGLKVAKEEWSQTLWINL-NVQILQEG 145 ldkllkqlrkLpkevrqyeakeafeklkqkiknfkkslpllqeLknpamk ++ +l+ lrkLp+ vr ++ +l++k k+fk+s+pll +Lkn+a++ fk13965y2 146 IEGFLRALRKLPRPVRGLS---VTYYLEAKMKAFKDSIPLLLDLKNEALR 192 eRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIvd +RHW++Lm+++ v f ++ e++tL+++ +++L +k+ + +++Iv+ fk13965y2 193 DRHWKELMEKTSVF-F-----EMTETFTLENMFAMEL-HKHTDVLNEIVT 235 qAqkElaiEkaLkeiketWsnveFelvpYkdtg...rckllkGgwdelfe +A kE+aiEka kei +tW n+ F++v+Y g+++r ++l ++de+++ fk13965y2 236 AAIKEVAIEKAVKEILDTWENMKFTVVKYC-KGtqeRGYILG-SVDEIIQ 283 kLeDnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWv L+Dn +Lqs++ S+++ pF++++ +Wek+Lsl+ e++eiW+ VQrkW+ fk13965y2 284 SLDDNTFNLQSISGSRFVGPFLQTVHKWEKTLSLIGEVIEIWMLVQRKWM 333 YLEgIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnip YLE+IFig+ DIr+QLPeEak+FdnIDk f++iM ++ kdp + +c p fk13965y2 334 YLESIFIGG-DIRSQLPEEAKKFDNIDKVFKRIMGETLKDPVIKRCCEAP 382 glleslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGns ++l L++++e LekcQK+Ln+YL++KR+aFPRF+F+SDd+LL+ILG s fk13965y2 383 NRLSD-LQNVSEGLEKCQKSLNDYLDSKRNAFPRFFFISDDELLSILG-S 430 kdPtrvQkHLkKlFdgIasLefdedgkd.ktIvgmvSkEGEeVpfsnpvs +dP vQ H+ K++d+IasL+f+++++++k + +m+S EGE+ +f++ v+ fk13965y2 431 SDPLCVQEHMIKMYDNIASLRFNDGDSGeKLVSAMISAEGEVMEFRKIVR 480 iegappVEeWLneLedeMkaTLkellreaveayr<-* +eg +VE+W++++ +eM++T + +++ea++ y fk13965y2 481 AEG--RVEDWMTAVLNEMRRTNRLITKEAIFRYC 512 PF08393.3.fs: domain 1 of 1, from 100 to 512: score 593.1, E = 2.2e-176 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee peL ++++E+ l+ +++ly+ +ew +t+W+ l +++ l+e fk13965y2 100 PELLKVQKEMSGLRMIYELYEGLKVAKEEWSQTLWINL-NVQILQEG 145 ldkllkqlrkLpkevrqyeakeafeklkqkiknfkkslpllqeLknpamk ++ +l+ lrkLp+ vr ++ +l++k k+fk+s+pll +Lkn+a++ fk13965y2 146 IEGFLRALRKLPRPVRGLS---VTYYLEAKMKAFKDSIPLLLDLKNEALR 192 eRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIvd +RHW++Lm+++ v f ++ e++tL+++ +++L +k+ + +++Iv+ fk13965y2 193 DRHWKELMEKTSVF-F-----EMTETFTLENMFAMEL-HKHTDVLNEIVT 235 qAqkElaiEkaLkeiketWsnveFelvpYkdtg...rckllkGgwdelfe +A kE+aiEka kei +tW n+ F++v+Y g+++r ++l ++de+++ fk13965y2 236 AAIKEVAIEKAVKEILDTWENMKFTVVKYC-KGtqeRGYILG-SVDEIIQ 283 kLeDnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWv L+Dn +Lqs++ S+++ pF++++ +Wek+Lsl+ e++eiW+ VQrkW+ fk13965y2 284 SLDDNTFNLQSISGSRFVGPFLQTVHKWEKTLSLIGEVIEIWMLVQRKWM 333 YLEgIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnip YLE+IFig+ DIr+QLPeEak+FdnIDk f++iM ++ kdp + +c p fk13965y2 334 YLESIFIGG-DIRSQLPEEAKKFDNIDKVFKRIMGETLKDPVIKRCCEAP 382 glleslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGns ++l L++++e LekcQK+Ln+YL++KR+aFPRF+F+SDd+LL+ILG s fk13965y2 383 NRLSD-LQNVSEGLEKCQKSLNDYLDSKRNAFPRFFFISDDELLSILG-S 430 kdPtrvQkHLkKlFdgIasLefdedgkd.ktIvgmvSkEGEeVpfsnpvs +dP vQ H+ K++d+IasL+f+++++++k + +m+S EGE+ +f++ v+ fk13965y2 431 SDPLCVQEHMIKMYDNIASLRFNDGDSGeKLVSAMISAEGEVMEFRKIVR 480 iegappVEeWLneLedeMkaTLkellreaveayr<-* +eg +VE+W++++ +eM++T + +++ea++ y fk13965y2 481 AEG--RVEDWMTAVLNEMRRTNRLITKEAIFRYC 512 PF07728.4.fs: domain 2 of 5, from 956 to 1101: score 40.7, E = 1.2e-11 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg + vGp+ GKs ++ l++a ++ g ++y+++++ + +L g fk13965y2 956 TTMVVGPTRGGKSVVINTLCQAQTKLGLTTKLYILNPKAVSVIELYG 1002 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras ++d + t+ w+dg+L r + +++ ++ i+++++++ fk13965y2 1003 ILD-------PTTRDWTDGVLSNIFREINKPTDKKERKYILFDGDVD--- 1042 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli + + ++s++d++rll+ +ge++ +++++ fk13965y2 1043 ALWVENMNSVMDDNRLLTLANGERI-------RLQAH------------- 1072 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+++ ++l+ +s+A+++R+ +v+vdp fk13965y2 1073 --CALLFEVGDLQ------YASPATVSRCGMVYVDPK 1101 PF07728.4.ls: domain 1 of 2, from 956 to 1101: score 42.5, E = 1.3e-09 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg + vGp+ GKs ++ l++a ++ g ++y+++++ + +L g fk13965y2 956 TTMVVGPTRGGKSVVINTLCQAQTKLGLTTKLYILNPKAVSVIELYG 1002 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras ++d + t+ w+dg+L r + +++ ++ i+++++++ fk13965y2 1003 ILD-------PTTRDWTDGVLSNIFREINKPTDKKERKYILFDGDVD--- 1042 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli + + ++s++d++rll+ +ge++ +++++ fk13965y2 1043 ALWVENMNSVMDDNRLLTLANGERI-------RLQAH------------- 1072 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+++ ++l+ +s+A+++R+ +v+vdp fk13965y2 1073 --CALLFEVGDLQ------YASPATVSRCGMVYVDPK 1101 PF07728.4.ls: domain 2 of 2, from 1298 to 1445: score 30.2, E = 6.8e-06 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +v++vG++Gt K+ ++ +++ ls + + +++v +++ tt+ d+ fk13965y2 1298 PVIFVGESGTSKTATTQNFLKNLSEE-TNIVLMVNFSSRTTSMDIQR 1343 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras ++ ++ ++++ + + + v+ D+ n+ + fk13965y2 1344 NLE-------ANVEKRTKDTYGPPMG----------KRLLVFMDDMNMPR 1376 .pev.....lnaLlslLderrlllpdggelvkvapydklaergreeldlw +e ++++++ L lL+ ++l+ d+g+++ ++ fk13965y2 1377 vDEYgtqqpIALLKLLLEKGYLY--DRGKELNCKS--------------- 1409 klgrlihdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* i d +ia+++ ++ +g+ne+++ ++++F +v+ p fk13965y2 1410 -----IRDLGFIAAMGKAG--GGRNEVDPRFISLFSVFNVPFP 1445 PF03028.6.fs: domain 1 of 1, from 2606 to 3317: score 1003.2, E = 2.1e-302 *->lentypnpkvdwlsdqqWdsiarLselee..FrgLdddleknapdkr ++ +++p+ wlsdq+W++i+ Lse+++++F L+dd+e n+ fk13965y2 2606 EKSKRKKPC-AWLSDQGWEDIILLSEMFSdnFGQLPDDVENNQ--TV 2649 WkkwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRl W++wyd ++ E ++P +++ + ++FqKLl+lR++R DR+ fk13965y2 2650 WQEWYDLDSL-EQFPVPLGYDN---------NITPFQKLLILRCFRVDRV 2689 tyalrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDP + a++++v ++ Gek+v+p p ++ i+e +S+p Pi+FiLSPG+DP fk13965y2 2690 YRAVTDYVTVTM-GEKYVQP-PMISFEAIFE-QSTPHSPIVFILSPGSDP 2736 skdvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVl + d+ kLA+ G ++G++l+ +++GQGQ+ +A +++etA+ +G W + fk13965y2 2737 ATDLMKLAERSG---FGGNRLKFLAMGQGQEK-VALQLLETAVARGQWLM 2782 LQNiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPi LQN+HL +WL++LEK Le++t+ +HpdFRL+LT+ p+ fPi fk13965y2 2783 LQNCHLLVKWLKDLEKSLERITK---PHPDFRLWLTTDPTKG-----FPI 2824 glLqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllF g+Lq S+K+++EPP+GlK N++++y + ++ e+l++c++p +fk+l++ fk13965y2 2825 GILQKSLKVVTEPPNGLKLNMRATYFK---ISHEMLDQCPHP-AFKPLVY 2870 lLCfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRq +L+fFHAVVqERRkFG++GWN+ Y+FNesD+++++ l++yL++ + fk13965y2 2871 VLAFFHAVVQERRKFGKIGWNVYYDFNESDFQVCMEILNTYLTKAFQ--- 2917 NidpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgn ++++PW L+Yl+Ge+mYGGr D +DrR+L+ y +e+ +++fd++ fk13965y2 2918 -QRDPRIPWGSLKYLIGEVMYGGRAIDSFDRRILTIYMDEYLGDFIFDTF 2966 adyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAE +++ +++ + ++++P + + e+++e Ie+ LP +Pe+fGLhpNAE fk13965y2 2967 QPFHFFRN--KEVDYKIPVGDEKEKFVEAIEA-LPLANTPEVFGLHPNAE 3013 IgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvl Ig++tq +++++ +llelQp + + +sg sr ++ + qv+ fk13965y2 3014 IGYYTQAARDMWAHLLELQPQTGE----SSSG--ISR-----DDYIGQVA 3052 rdileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlke ++i k+p k Fd+++++++++++ +P+ vVl+QE+er+NkL+ fk13965y2 3053 KEIENKMP-----KVFDLDQVRKRLGTGL-SPTSVVLLQELERFNKLVVR 3096 irrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkp +++SL+eL+++l Ge+ msn+l +++ sL++g +P W+++++ +lk+ fk13965y2 3097 MTKSLAELQRALAGEVGMSNELDDVARSLFIGHIPN--IWRRLAPDTLKS 3144 LgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQ Lg+W+ +l+R Q+ W ++ ++P+v WLsG+++P+s+LTA+ Q fk13965y2 3145 LGNWMVYFLRRFSQYMLWVTE------SEPSVMWLSGLHIPESYLTALVQ 3188 svARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWD +++Rkn+wPLD+ +L t Vtk+++ ++ ++ + +G++V+GL+LEGA WD fk13965y2 3189 ATCRKNGWPLDRSTLFTQVTKFQDADEVNER-AGQGCFVSGLYLEGADWD 3237 sktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRgg +++g l++skpK+L+ +P++ + +++a +++ +++++ PVY t+ R++ fk13965y2 3238 IEKGCLIKSKPKVLVVDLPILKIIPIEA-HRLKLQNTFRTPVYTTSMRRN 3286 vLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +++ +++vf+++L t + s+W+l+GV+L l+ fk13965y2 3287 AMG-----VGLVFEADLFTTR--HISHWVLQGVCLTLN 3317 PF03028.6.ls: domain 1 of 1, from 2606 to 3317: score 1005.0, E = 2.4e-299 *->lentypnpkvdwlsdqqWdsiarLselee..FrgLdddleknapdkr ++ +++p+ wlsdq+W++i+ Lse+++++F L+dd+e n+ fk13965y2 2606 EKSKRKKPC-AWLSDQGWEDIILLSEMFSdnFGQLPDDVENNQ--TV 2649 WkkwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRl W++wyd ++ E ++P +++ + ++FqKLl+lR++R DR+ fk13965y2 2650 WQEWYDLDSL-EQFPVPLGYDN---------NITPFQKLLILRCFRVDRV 2689 tyalrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDP + a++++v ++ Gek+v+p p ++ i+e +S+p Pi+FiLSPG+DP fk13965y2 2690 YRAVTDYVTVTM-GEKYVQP-PMISFEAIFE-QSTPHSPIVFILSPGSDP 2736 skdvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVl + d+ kLA+ G ++G++l+ +++GQGQ+ +A +++etA+ +G W + fk13965y2 2737 ATDLMKLAERSG---FGGNRLKFLAMGQGQEK-VALQLLETAVARGQWLM 2782 LQNiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPi LQN+HL +WL++LEK Le++t+ +HpdFRL+LT+ p+ fPi fk13965y2 2783 LQNCHLLVKWLKDLEKSLERITK---PHPDFRLWLTTDPTKG-----FPI 2824 glLqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllF g+Lq S+K+++EPP+GlK N++++y + ++ e+l++c++p +fk+l++ fk13965y2 2825 GILQKSLKVVTEPPNGLKLNMRATYFK---ISHEMLDQCPHP-AFKPLVY 2870 lLCfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRq +L+fFHAVVqERRkFG++GWN+ Y+FNesD+++++ l++yL++ + fk13965y2 2871 VLAFFHAVVQERRKFGKIGWNVYYDFNESDFQVCMEILNTYLTKAFQ--- 2917 NidpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgn ++++PW L+Yl+Ge+mYGGr D +DrR+L+ y +e+ +++fd++ fk13965y2 2918 -QRDPRIPWGSLKYLIGEVMYGGRAIDSFDRRILTIYMDEYLGDFIFDTF 2966 adyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAE +++ +++ + ++++P + + e+++e Ie+ LP +Pe+fGLhpNAE fk13965y2 2967 QPFHFFRN--KEVDYKIPVGDEKEKFVEAIEA-LPLANTPEVFGLHPNAE 3013 IgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvl Ig++tq +++++ +llelQp + + +sg sr ++ + qv+ fk13965y2 3014 IGYYTQAARDMWAHLLELQPQTGE----SSSG--ISR-----DDYIGQVA 3052 rdileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlke ++i k+p k Fd+++++++++++ +P+ vVl+QE+er+NkL+ fk13965y2 3053 KEIENKMP-----KVFDLDQVRKRLGTGL-SPTSVVLLQELERFNKLVVR 3096 irrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkp +++SL+eL+++l Ge+ msn+l +++ sL++g +P W+++++ +lk+ fk13965y2 3097 MTKSLAELQRALAGEVGMSNELDDVARSLFIGHIPN--IWRRLAPDTLKS 3144 LgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQ Lg+W+ +l+R Q+ W ++ ++P+v WLsG+++P+s+LTA+ Q fk13965y2 3145 LGNWMVYFLRRFSQYMLWVTE------SEPSVMWLSGLHIPESYLTALVQ 3188 svARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWD +++Rkn+wPLD+ +L t Vtk+++ ++ ++ + +G++V+GL+LEGA WD fk13965y2 3189 ATCRKNGWPLDRSTLFTQVTKFQDADEVNER-AGQGCFVSGLYLEGADWD 3237 sktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRgg +++g l++skpK+L+ +P++ + +++a +++ +++++ PVY t+ R++ fk13965y2 3238 IEKGCLIKSKPKVLVVDLPILKIIPIEA-HRLKLQNTFRTPVYTTSMRRN 3286 vLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +++ +++vf+++L t + s+W+l+GV+L l+ fk13965y2 3287 AMG-----VGLVFEADLFTTR--HISHWVLQGVCLTLN 3317 //