hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-13562032/chunk_1/iprscan-20080811-13562032.nocrc
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Query sequence: fk13965y2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  38.6    8.3e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/3     674   810 ..     1    92 []    12.6      1.3
SM00382    2/3     953  1089 ..     1    92 []     5.0      7.2
SM00382    3/3    1295  1448 ..     1    92 []    21.0     0.17

Alignments of top-scoring domains:
SM00382: domain 1 of 3, from 674 to 810: score 12.6, E = 1.3
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...ggqrirla
                       g+  +  Gp G+GKT + + la+ lg  +++ ++ ++   + + ++
   fk13965y2   674    LGGAPA--GPAGTGKTETTKDLAKALGLLCVVTNCGegmDYRAVGKI 718  

                   lalark..dvlllDEitslld.............................
                   +  + + +    +DE +++  + ++  +++ +  ++ + +++   + +++
   fk13965y2   719 FSGLAQcgAWGCFDEFNRIDAsvlsvissqiqtirnalihqlttfqfegq 768  

                   .......vtviattn......dldpallrrrfdrrivllril<-*
                   + +++++  +++t+n++  +++++p  +++ f+ ++v+ + l   
   fk13965y2   769 eisldsrMGIFITMNpgyagrTELPESVKALFRPVVVIVPDL    810  

SM00382: domain 2 of 3, from 953 to 1089: score 5.0, E = 7.2
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge......
                      + +++++vGp+  GK+++++ l++   + + +++ +++++   +  +
   fk13965y2   953    TRHTTMVVGPTRGGKSVVINTLCQAQTKlglttKLYILNPKavsvie 999  

                   ............ggqrirlalalark................dvlllDEi
                     +  +   ++     + ++++ ++k+++++ ++    +++ d l++  +
   fk13965y2  1000 lygildpttrdwTDGVLSNIFREINKptdkkerkyilfdgdvDALWVENM 1049 

                   tslld.vtviattn....dldpallrr.rfdrrivllril<-*
                   +s  d+ +++  +n+++  l+ + + +  + +  +  + +   
   fk13965y2  1050 NSVMDdNRLLTLANgeriRLQAHCALLfEVGDLQYASPAT    1089 

SM00382: domain 3 of 3, from 1295 to 1448: score 21.0, E = 0.17
                   *->pgevvllvGppGsGKTTlaralarllgp...gviyidge....ggqr
                       +++v++vG++G+ KT + + ++++l ++++ v++++ +++  ++++
   fk13965y2  1295    IKQPVIFVGESGTSKTATTQNFLKNLSEetnIVLMVNFSsrttSMDI 1341 

                   irlalalark.............dvlllDEitslld..............
                   +r++ a ++k+++++ +++ +++ ++++D++++   ++ + ++   ++++
   fk13965y2  1342 QRNLEANVEKrtkdtygppmgkrLLVFMDDMNMPRVdeygtqqpiallkl 1391 

                   .....................vtviattn.......dldpallrrrfdrr
                   +++++ + +++++++ ++ +++ +ia++ + ++++++ dp+ + + + + 
   fk13965y2  1392 llekgylydrgkelncksirdLGFIAAMGkagggrnEVDPRFISLFSVFN 1441 

                   ivllril<-*
                   + ++  +   
   fk13965y2  1442 VPFPSEE    1448 

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