hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14025916/chunk_1/iprscan-20080811-14025916.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk13966
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00755.10.fs   Choline/Carnitine o-acyltransferase     411.3   1.2e-120   1
PF00755.10.ls   Choline/Carnitine o-acyltransferase     164.2    3.1e-46   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00755.10.ls     1/1       1   400 []     1   662 []   164.2  3.1e-46
PF00755.10.fs     1/1       3   363 ..    50   474 ..   411.3 1.2e-120

Alignments of top-scoring domains:
PF00755.10.ls: domain 1 of 1, from 1 to 400: score 164.2, E = 3.1e-46
                   *->sLPkLPVPaLedTldrYLesvkPllseeefertealvkeFsapggeG
                                                              s      
     fk13966     1    ----------------------------------------SL----- 2    

                   ekLQeyLlerakktksnkedNWlsewWldyaYlagRdvpLpvNSspgshv
                     LQ+yL ++++++     +N++s+wW++  Yl+ R  pL+vNS++   +
     fk13966     3 --LQWYLRLKSWWA-----SNYVSDWWEEFVYLRSR-NPLMVNSNY---Y 41   

                   vfpkhdfpdtyndQlrrAarlihgilsfkrlldreelPEVFHlNPkpeta
                   +++ +++ +t   Q++rA++  h++l+++ +l r+e+        +p+ +
     fk13966    42 MMDFLYVTPT-PLQAARAGNAVHALLLYRHRLNRQEI--------PPTLL 82   

                   lGrlikflPSLSWyGAvlkktPLcMnQYyrlFnscRiPGkkkDnqDslql
                    G                   PLc++QY+ +Fn++RiPG++   +D +++
     fk13966    83 MG-----------------MRPLCSAQYEKIFNTTRIPGVQ---KDYIRH 112  

                   yskskneGkcpeHvvVlcrGqfykldvldsdngklLspeeiekqLakIls
                     +s        Hv+V++rG+f++  ++ +  + lLsp+ +e+q+++Il+
     fk13966   113 LHDSQ-------HVAVFHRGRFFRMGTHSR--NSLLSPRALEQQFQRILD 153  

                   dssksqpkeapiGaLTsepRdeWAkaRqkLfkdnkeNkesLekIesAlFv
                   d s++ p e+ ++aLT+ pR +WA++R++L +     +e Le++e A+F+
     fk13966   154 DPSPACPHEEHLAALTAAPRGTWAQVRTSLKTQ---AAEALEAVEGAAFF 200  

                   vCLDddspidyepvgeeekk.tsmlsglhggglhsifgdglNRWfDKslq
                   v+LD +      p+g   +++ ++l+++   +l+   g+g +RWfDKs++
     fk13966   201 VSLDAE------PAGLTREDpAASLDAYAHALLA---GRGHDRWFDKSFT 241  

                   lIvsknGstGlnaEHSpaDGppvvhLmenvykvdeqilksnvteeglpvg
                   lIv++nG+ Gl  EHS+aD p+ +h++e  ++  ++ +  + + +g+++g
     fk13966   242 LIVFSNGKLGLSVEHSWADCPISGHMWE--FTLATECFQLGYSTDGHCKG 289  

                   spsandkkslplPekLeFeitpelqsdIekAkekfdklisdLdlvvlqFt
                   +p ++    lp P++L+++++++++s I+ A + +++l++++d +v+ F 
     fk13966   290 HPDPT----LPQPQRLQWDLPDQIHSSISLALRGAKILSENVDCHVVPFS 335  

                   nFGKgfiKkcklSPDaFIQlAlQLAyYrylyGkfvpTYEsASTRmFlhGR
                    FGK fi +c lS D+FIQ+AlQLA++r                      
     fk13966   336 LFGKSFIRRCHLSSDSFIQIALQLAHFR---------------------- 363  

                   TETiRSvTtesleFVqAMldekpsaskeekrqLLkkAckkHvqytkeamt
                                   +++ +++                           
     fk13966   364 ---------------VSWVPHPQP-------------------------- 372  

                   GkGiDRHLfgLkllakeWYlglesPFPLelFlDpsyllstsfvlSqtnst
                                       gl+ P                         
     fk13966   373 ----------------P--QGLSPP------------------------- 379  

                   SedqvptktdigggFGPVvdDGYGicYniqGneriffhISsfsScpeTda
                       +p+                    +++ + r+               
     fk13966   380 ----EPP--------------------RPA-PPRFL-------------- 390  

                   drFakyLekALldmkd<-*
                         +  A     +   
     fk13966   391 ------VVAAIVGRPS    400  

PF00755.10.fs: domain 1 of 1, from 3 to 363: score 411.3, E = 1.2e-120
                   *->LQeyLlerakktksnkedNWlsewWldyaYlagRdvpLpvNSspgsh
                      LQ+yL ++++++     +N++s+wW++  Yl+ R  pL+vNS++   
     fk13966     3    LQWYLRLKSWWA-----SNYVSDWWEEFVYLRSR-NPLMVNSNY--- 40   

                   vvfpkhdfpdtyndQlrrAarlihgilsfkrlldreelPEVFHlNPkpet
                   ++++ +++ +t   Q++rA++  h++l+++ +l r+e+        +p+ 
     fk13966    41 YMMDFLYVTPT-PLQAARAGNAVHALLLYRHRLNRQEI--------PPTL 81   

                   alGrlikflPSLSWyGAvlkktPLcMnQYyrlFnscRiPGkkkDnqDslq
                   + G                   PLc++QY+ +Fn++RiPG++   +D ++
     fk13966    82 LMG-----------------MRPLCSAQYEKIFNTTRIPGVQ---KDYIR 111  

                   lyskskneGkcpeHvvVlcrGqfykldvldsdngklLspeeiekqLakIl
                   +  +s        Hv+V++rG+f++  ++ +  + lLsp+ +e+q+++Il
     fk13966   112 HLHDSQ-------HVAVFHRGRFFRMGTHSR--NSLLSPRALEQQFQRIL 152  

                   sdssksqpkeapiGaLTsepRdeWAkaRqkLfkdnkeNkesLekIesAlF
                   +d s++ p e+ ++aLT+ pR +WA++R++L +     +e Le++e A+F
     fk13966   153 DDPSPACPHEEHLAALTAAPRGTWAQVRTSLKTQ---AAEALEAVEGAAF 199  

                   vvCLDddspidyepvgeeekk.tsmlsglhggglhsifgdglNRWfDKsl
                   +v+LD +      p+g   +++ ++l+++   +l+   g+g +RWfDKs+
     fk13966   200 FVSLDAE------PAGLTREDpAASLDAYAHALLA---GRGHDRWFDKSF 240  

                   qlIvsknGstGlnaEHSpaDGppvvhLmenvykvdeqilksnvteeglpv
                   +lIv++nG+ Gl  EHS+aD p+ +h++e  ++  ++ +  + + +g+++
     fk13966   241 TLIVFSNGKLGLSVEHSWADCPISGHMWE--FTLATECFQLGYSTDGHCK 288  

                   gspsandkkslplPekLeFeitpelqsdIekAkekfdklisdLdlvvlqF
                   g+p ++    lp P++L+++++++++s I+ A + +++l++++d +v+ F
     fk13966   289 GHPDPT----LPQPQRLQWDLPDQIHSSISLALRGAKILSENVDCHVVPF 334  

                   tnFGKgfiKkcklSPDaFIQlAlQLAyYr<-*
                     FGK fi +c lS D+FIQ+AlQLA++r   
     fk13966   335 SLFGKSFIRRCHLSSDSFIQIALQLAHFR    363  

//