hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13305401/chunk_1/iprscan-20090618-13305401.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk13967
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.ls KH domain                                      205.3    1.3e-58   3
PF00013.19.fs KH domain                                      199.8    5.9e-57   3
PF08067.2.fs ROKNT (NUC014) domain                           96.7      6e-27   1
PF08067.2.ls ROKNT (NUC014) domain                           98.7    1.7e-26   1
PF07650.7.fs KH domain                                       31.6      4e-08   3
PF07650.7.ls KH domain                                       10.1     0.0069   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08067.2.fs   1/1       3    45 ..     1    46 []    96.7    6e-27
PF08067.2.ls   1/1       3    45 ..     1    46 []    98.7  1.7e-26
PF00013.19.fs   1/3      46   106 ..     1    73 []    56.5  3.3e-15
PF00013.19.ls   1/3      46   106 ..     1    73 []    58.3  2.3e-14
PF07650.7.ls   1/2      46    94 ..     1    78 []     5.5    0.024
PF00013.19.ls   2/3     124   187 ..     1    73 []    63.2  7.7e-16
PF00013.19.fs   2/3     124   187 ..     1    73 []    61.4  1.4e-16
PF00013.19.ls   3/3     367   429 ..     1    73 []    83.8  4.9e-22
PF00013.19.fs   3/3     367   429 ..     1    73 []    81.9  2.2e-22

Alignments of top-scoring domains:
PF08067.2.fs: domain 1 of 1, from 3 to 45: score 96.7, E = 6e-27
                   *->metEndpqeEEtFsnkEsngefGKRsAeDsEEEkayKRsRnsDEmv<
                      metE   q+EEtF+n+E+ngefGKR+AeD+EEE+a+KRsRn+DEmv 
     fk13967     3    METE---QPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMV  45   

                   -*
                     
     fk13967     -    -    

PF08067.2.ls: domain 1 of 1, from 3 to 45: score 98.7, E = 1.7e-26
                   *->metEndpqeEEtFsnkEsngefGKRsAeDsEEEkayKRsRnsDEmv<
                      metE   q+EEtF+n+E+ngefGKR+AeD+EEE+a+KRsRn+DEmv 
     fk13967     3    METE---QPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMV  45   

                   -*
                     
     fk13967     -    -    

PF00013.19.fs: domain 1 of 3, from 46 to 106: score 56.5, E = 3.3e-15
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++ril  s+ +G++IGkgG++Ik++r +++a++ +pd+         
     fk13967    46    ELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSS-------- 84   

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er+ +Is++ e + + +k i   
     fk13967    85 ----GPERILSISADIETIGEILKKI    106  

PF00013.19.ls: domain 1 of 3, from 46 to 106: score 58.3, E = 2.3e-14
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++ril  s+ +G++IGkgG++Ik++r +++a++ +pd+         
     fk13967    46    ELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSS-------- 84   

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er+ +Is++ e + + +k i   
     fk13967    85 ----GPERILSISADIETIGEILKKI    106  

PF07650.7.ls: domain 1 of 2, from 46 to 94: score 5.5, E = 0.024
                   *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqieviEySd
                        ++ + +   G vIGKgG+nIk+l+++           + v     
     fk13967    46    ELRILLQSKNAGAVIGKGGKNIKALRTDYNAS-------VSVPD--- 82   

                   eeFgkkVfLeLwVKVkknWvknpellaqLga<-*
                                         pe   ++ a   
     fk13967    83 -------------------SSGPERILSISA    94   

PF00013.19.ls: domain 2 of 3, from 124 to 187: score 63.2, E = 7.7e-16
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++r+li++s++G iIG +G++Ike+re t + I++ ++        +
     fk13967   124    ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-------C 163  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p   s++r+v I G+p++v +++k i   
     fk13967   164 P--HSTDRVVLIGGKPDRVVECIKII    187  

PF00013.19.fs: domain 2 of 3, from 124 to 187: score 61.4, E = 1.4e-16
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++r+li++s++G iIG +G++Ike+re t + I++ ++        +
     fk13967   124    ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC-------C 163  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p   s++r+v I G+p++v +++k i   
     fk13967   164 P--HSTDRVVLIGGKPDRVVECIKII    187  

PF00013.19.ls: domain 3 of 3, from 367 to 429: score 83.8, E = 4.9e-22
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t +++ip++++G+iIGkgG+ Ik+Ir e+Ga+I+i+++         
     fk13967   367    TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-------- 405  

                   plngsgertvtIsGtpeavekAkkli<-*
                      gs++r++tI+Gt++++++A++l+   
     fk13967   406 E--GSEDRIITITGTQDQIQNAQYLL    429  

PF00013.19.fs: domain 3 of 3, from 367 to 429: score 81.9, E = 2.2e-22
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t +++ip++++G+iIGkgG+ Ik+Ir e+Ga+I+i+++         
     fk13967   367    TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-------- 405  

                   plngsgertvtIsGtpeavekAkkli<-*
                      gs++r++tI+Gt++++++A++l+   
     fk13967   406 E--GSEDRIITITGTQDQIQNAQYLL    429  

//