hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-13305401/chunk_1/iprscan-20090618-13305401.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk13967
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00322                                                 183.9    1.6e-50   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00322    1/3      43   111 ..     1    63 []    52.0  7.9e-11
SM00322    2/3     121   192 ..     1    63 []    56.1  4.5e-12
SM00322    3/3     364   434 ..     1    63 []    75.8  5.4e-18

Alignments of top-scoring domains:
SM00322: domain 1 of 3, from 43 to 111: score 52.0, E = 7.9e-11
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert
                      + v++++   ++ +G++IGkgG++Ik+++ ++++++ +p+++++er+
     fk13967    43    EmVELRIlLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDssgpERI 89   

                   vtItGppenvekAkelileile<-*
                   ++I+++ e + + ++ i   le   
     fk13967    90 LSISADIETIGEILKKIIPTLE    111  

SM00322: domain 2 of 3, from 121 to 192: score 56.1, E = 4.5e-12
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg.......
                       ++++++ i+++++G iIG +G+ Ik+++e t++ I++ ++  ++++
     fk13967   121    FdCELRLlIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQeccphst 167  

                   ertvtItGppenvekAkelileile<-*
                   +r+v I G p+ v ++++ il++++   
     fk13967   168 DRVVLIGGKPDRVVECIKIILDLIS    192  

SM00322: domain 3 of 3, from 364 to 434: score 75.8, E = 5.4e-18
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg......e
                        +t++v+ip+d++G+iIGkgG++Ik+i+ e+g++I+i+++ +++++
     fk13967   364    PiITTQVtIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEplegseD 410  

                   rtvtItGppenvekAkelileile<-*
                   r++tItG+ ++++ A++l+++ ++   
     fk13967   411 RIITITGTQDQIQNAQYLLQNSVK    434  

//