hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14153764/chunk_1/iprscan-20080811-14153764.nocrc
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Query sequence: fk13968
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04037.4.fs Domain of unknown function (DUF382)            328.2      9e-98   1
PF04037.4.ls Domain of unknown function (DUF382)            330.0    3.8e-96   1
PF04046.7.ls PSP                                             94.8    2.4e-25   1
PF04046.7.fs PSP                                             92.9    8.8e-25   1
PF02037.17.fs SAP domain                                      41.3    1.9e-10   2
PF02037.17.ls SAP domain                                      40.5    5.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02037.17.fs   1/2      83   117 ..     1    35 []    38.5  1.2e-09
PF02037.17.ls   1/1      83   117 ..     1    35 []    40.5  5.3e-09
PF04037.4.fs   1/1     528   656 ..     1   141 []   328.2    9e-98
PF04037.4.ls   1/1     528   656 ..     1   141 []   330.0  3.8e-96
PF04046.7.ls   1/1     664   716 ..     1    54 []    94.8  2.4e-25
PF04046.7.fs   1/1     664   716 ..     1    54 []    92.9  8.8e-25

Alignments of top-scoring domains:
PF02037.17.fs: domain 1 of 2, from 83 to 117: score 38.5, E = 1.2e-09
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      + ++  +eL+++L+++G +++G+++eLveRL+ ++   
     fk13968    83    YGAWAAQELQAKLAEIGAPIQGNREELVERLQSYT    117  

PF02037.17.ls: domain 1 of 1, from 83 to 117: score 40.5, E = 5.3e-09
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      + ++  +eL+++L+++G +++G+++eLveRL+ ++   
     fk13968    83    YGAWAAQELQAKLAEIGAPIQGNREELVERLQSYT    117  

PF04037.4.fs: domain 1 of 1, from 528 to 656: score 328.2, E = 9e-98
                   *->vprPdvvEweDvtsrDPklLvrlKayrNtVPVPrHWssKrkYLsGkr
                      v+rPdvvE++Dvt++DPklLv+lKa+rN+VPVPrHW++KrkYL+Gkr
     fk13968   528    VARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKR 574  

                   GieKppFeLPdfIkaTGIeemReallEkgldgeaeksLkekmRErvqPKm
                   GieKppFeLPdfIk+TGI+emReal+Ek    e++k++k+kmRE+v+PKm
     fk13968   575 GIEKPPFELPDFIKRTGIQEMREALQEK----EEQKTMKSKMREKVRPKM 620  

                   GklDiDYqkLhDAFFkyqtnwKPkLtkfGeffePvDlYyEgKel<-*
                   Gk+DiDYqkLhDAFFk+qt  KPkLt++G      DlYyEgKe+   
     fk13968   621 GKIDIDYQKLHDAFFKWQT--KPKLTIHG------DLYYEGKEF    656  

PF04037.4.ls: domain 1 of 1, from 528 to 656: score 330.0, E = 3.8e-96
                   *->vprPdvvEweDvtsrDPklLvrlKayrNtVPVPrHWssKrkYLsGkr
                      v+rPdvvE++Dvt++DPklLv+lKa+rN+VPVPrHW++KrkYL+Gkr
     fk13968   528    VARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKR 574  

                   GieKppFeLPdfIkaTGIeemReallEkgldgeaeksLkekmRErvqPKm
                   GieKppFeLPdfIk+TGI+emReal+Ek    e++k++k+kmRE+v+PKm
     fk13968   575 GIEKPPFELPDFIKRTGIQEMREALQEK----EEQKTMKSKMREKVRPKM 620  

                   GklDiDYqkLhDAFFkyqtnwKPkLtkfGeffePvDlYyEgKel<-*
                   Gk+DiDYqkLhDAFFk+qt  KPkLt++G      DlYyEgKe+   
     fk13968   621 GKIDIDYQKLHDAFFKWQT--KPKLTIHG------DLYYEGKEF    656  

PF04046.7.ls: domain 1 of 1, from 664 to 716: score 94.8, E = 2.4e-25
                   *->KPGriSdeLReaLGlpeG....kdpPPWlyrMrrlGlidGyPPGYLp
                      KPG++SdeLR+ LG+p G++ +k pPPWl++M+r+    G+PP+Y p
     fk13968   664    KPGDLSDELRISLGMPVGpnahKVPPPWLIAMQRY----GPPPSY-P 705  

                   elkipglnapi<-*
                   +lkipgln+pi   
     fk13968   706 NLKIPGLNSPI    716  

PF04046.7.fs: domain 1 of 1, from 664 to 716: score 92.9, E = 8.8e-25
                   *->KPGriSdeLReaLGlpeG....kdpPPWlyrMrrlGlidGyPPGYLp
                      KPG++SdeLR+ LG+p G++ +k pPPWl++M+r+    G+PP+Y p
     fk13968   664    KPGDLSDELRISLGMPVGpnahKVPPPWLIAMQRY----GPPPSY-P 705  

                   elkipglnapi<-*
                   +lkipgln+pi   
     fk13968   706 NLKIPGLNSPI    716  

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