hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-14205328/chunk_1/iprscan-20080811-14205328.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk14403 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.ls ABC transporter 301.5 1.4e-87 2 PF00005.17.fs ABC transporter 298.1 1.6e-86 2 PF05729.3.fs NACHT domain 33.2 1.4e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/2 77 272 .. 1 224 [] 154.2 3.1e-43 PF00005.17.ls 1/2 77 272 .. 1 224 [] 156.0 9.3e-44 PF00005.17.fs 2/2 399 563 .. 1 224 [] 143.8 4.3e-40 PF00005.17.ls 2/2 399 563 .. 1 224 [] 145.5 1.3e-40 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 2, from 77 to 272: score 154.2, E = 3.1e-43 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G +++lvGpNG GK+TLLk ++ + +++ ++ + fk14403 77 GRRYGLVGPNGKGKTTLLKHIA---------NRALSIPPNID----- 109 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTv................. + + Q++ +p + + ++++ + +++++ fk14403 110 ---------------VLLCEQEVVADETPAVQAvlradtkrlklleeerr 144 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...................renlayglpdkkaggkereallrllgleeea +++ ++++++ ++ ++ +e+l+ + + a fk14403 145 lqgqleqgddtaaerlekvYEELRATGAAA-------------------A 175 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx daraeeaLervGlpdladrsnLpqgydtvlgerpgtLSGGqkQRvaiARa +a+a+ +L+ +G+++++++ +++ +SGG+++Rv++ARa fk14403 176 EAKARRILAGLGFDPEMQN------------RPTQKFSGGWRMRVSLARA 213 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lltkpklLlLDEPTagLDpasraqllellrelrgeqgitvllitHdldll l+++p+lL LDEPT++LD +++ +l ++l+ +r+ t+l+++Hd ++l fk14403 214 LFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRK----TLLIVSHDQGFL 259 RF xxxxxxxxxxxxx drladrilvlenG<-* d+++++i++l+++ fk14403 260 DDVCTDIIHLDAQ 272 PF00005.17.ls: domain 1 of 2, from 77 to 272: score 156.0, E = 9.3e-44 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G +++lvGpNG GK+TLLk ++ + +++ ++ + fk14403 77 GRRYGLVGPNGKGKTTLLKHIA---------NRALSIPPNID----- 109 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTv................. + + Q++ +p + + ++++ + +++++ fk14403 110 ---------------VLLCEQEVVADETPAVQAvlradtkrlklleeerr 144 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...................renlayglpdkkaggkereallrllgleeea +++ ++++++ ++ ++ +e+l+ + + a fk14403 145 lqgqleqgddtaaerlekvYEELRATGAAA-------------------A 175 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx daraeeaLervGlpdladrsnLpqgydtvlgerpgtLSGGqkQRvaiARa +a+a+ +L+ +G+++++++ +++ +SGG+++Rv++ARa fk14403 176 EAKARRILAGLGFDPEMQN------------RPTQKFSGGWRMRVSLARA 213 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lltkpklLlLDEPTagLDpasraqllellrelrgeqgitvllitHdldll l+++p+lL LDEPT++LD +++ +l ++l+ +r+ t+l+++Hd ++l fk14403 214 LFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRK----TLLIVSHDQGFL 259 RF xxxxxxxxxxxxx drladrilvlenG<-* d+++++i++l+++ fk14403 260 DDVCTDIIHLDAQ 272 PF00005.17.fs: domain 2 of 2, from 399 to 563: score 143.8, E = 4.3e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++ +vGpNG GKSTLL ll+G l+ Pt +Ge + +++ k fk14403 399 DSRICIVGPNGVGKSTLLLLLTGKLT-PT--HGEMRKNHRLK----- 437 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k ig+ Q+ l+ + T e l ++g + fk14403 438 ---------------IGFFNQQYAEQLRMEETPTEYL--------QRGfN 464 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx e.reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerp +++ + a++ L r+Gl+ a++ ++ fk14403 465 LpY--------------QDARKCLGRFGLESHAHT------------IQI 488 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrg LSGGqk Rv A + +++p++L+LDEPT++LD++s+++l e+++e++g fk14403 489 CKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKG 538 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx eqgitvllitHdldlldrladrilvlenG<-* +v++++Hd++l+ + ++v+e++ fk14403 539 ----AVIVVSHDARLITETNCQLWVVEEQ 563 PF00005.17.ls: domain 2 of 2, from 399 to 563: score 145.5, E = 1.3e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++ +vGpNG GKSTLL ll+G l+ Pt +Ge + +++ k fk14403 399 DSRICIVGPNGVGKSTLLLLLTGKLT-PT--HGEMRKNHRLK----- 437 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k ig+ Q+ l+ + T e l ++g + fk14403 438 ---------------IGFFNQQYAEQLRMEETPTEYL--------QRGfN 464 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx e.reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerp +++ + a++ L r+Gl+ a++ ++ fk14403 465 LpY--------------QDARKCLGRFGLESHAHT------------IQI 488 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrg LSGGqk Rv A + +++p++L+LDEPT++LD++s+++l e+++e++g fk14403 489 CKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKG 538 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx eqgitvllitHdldlldrladrilvlenG<-* +v++++Hd++l+ + ++v+e++ fk14403 539 ----AVIVVSHDARLITETNCQLWVVEEQ 563 //