hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14205328/chunk_1/iprscan-20080811-14205328.nocrc
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Query sequence: fk14403
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  91.6    9.5e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2      76   280 ..     1    92 []    45.2  8.6e-09
SM00382    2/2     398   563 ..     1    92 []    46.4  3.9e-09

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 76 to 280: score 45.2, E = 8.6e-09
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge......
                      +g++++lvGp+G GKTTl++ +a+ +   +++ +v+++  e   ++ 
     fk14403    76    AGRRYGLVGPNGKGKTTLLKHIANRALSippniDVLLCEQEvvadet 122  

                   ..................................................
                      +   + + ++ +  +++++ +++ +++++   ++ ++  ++ +  + 
     fk14403   123 pavqavlradtkrlklleeerrlqgqleqgddtaaerlekvyeelratga 172  

                   .............................ggqrirlalalark...dvll
                      + + ++   + + + + +++  ++ +gg r+r+ la+a    + +l 
     fk14403   173 aaaeakarrilaglgfdpemqnrptqkfsGGWRMRVSLARALFmepTLLM 222  

                   lDEitslld...............vtviattn...dldpallrr..rfdr
                   lDE+t++ld++    +++ +++ ++t++++++++++ld+  + + +   +
     fk14403   223 LDEPTNHLDlnaviwlnnylqgwrKTLLIVSHdqgFLDDVCTDIihLDAQ 272  

                   rivllril<-*
                   r+++ r++   
     fk14403   273 RLHYYRGN    280  

SM00382: domain 2 of 2, from 398 to 563: score 46.4, E = 3.9e-09
                   *->pgevvllvGppGsGKTTlaralarllgp......gviyidge.....
                        +++++vGp+G+GK+Tl+++l + l p++++ ++  ++     +++
     fk14403   398    MDSRICIVGPNGVGKSTLLLLLTGKLTPthgemrKNHRLKIGffnqq 444  

                   ................................................gg
                     ++ + ++   +  +++ +   ++ ++  ++ + +++ +  +  + +gg
     fk14403   445 yaeqlrmeetpteylqrgfnlpyqdarkclgrfgleshahtiqicklsGG 494  

                   qrir.lalalark..dvlllDEitslld...............vtviatt
                   q++r +  +la + +dvl+lDE+t+ ld ++ + +++  ++ ++ vi+++
     fk14403   495 QKARvVFAELACRepDVLILDEPTNNLDiesidalgeaineykGAVIVVS 544  

                   ndldpallrrrfdrrivllril<-*
                   +   +a l+    +++ +       
     fk14403   545 H---DARLITETNCQLWVVEEQ    563  

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